Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8401

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8400: 16768 - K12189 VPS25, EAP20 ESCRT-II complex subunit VPS25, at 1129262 to 1130136 16768 mRNA_8401: 16769 - K16315 GSG2 serine/threonine-protein kinase haspin, at 1130370 to 1132967 16769 mRNA_8402: 16770 - K07579 K07579 putative methylase, at 1133086 to 1134230 16770

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,129,467 + 16768 mRNA_8400 0.23 -1.8
1,129,476 + 16768 mRNA_8400 0.24 1.2
1,129,640 - 16768 mRNA_8400 0.43 -2.1
1,130,171 - 1.3
1,130,227 - -1.0
1,130,230 + 0.1
1,130,322 - -1.5
1,130,322 - 1.1
1,130,393 + 0.4
1,130,497 - -0.1
1,130,617 + -0.4
1,130,958 + 16769 mRNA_8401 0.23 -0.8
1,131,046 + 16769 mRNA_8401 0.26 -0.3
1,131,111 + 16769 mRNA_8401 0.29 -0.2
1,131,133 - 16769 mRNA_8401 0.29 -2.1
1,131,223 + 16769 mRNA_8401 0.33 0.3
1,131,249 - 16769 mRNA_8401 0.34 -1.2
1,131,589 + 16769 mRNA_8401 0.47 0.3
1,131,804 - 16769 mRNA_8401 0.55 -0.7
1,131,829 - 16769 mRNA_8401 0.56 -2.1
1,131,832 + 16769 mRNA_8401 0.56 1.0
1,132,065 - 16769 mRNA_8401 0.65 -3.1
1,132,081 - 16769 mRNA_8401 0.66 -0.3
1,132,423 - 16769 mRNA_8401 0.79 1.4
1,132,689 - 16769 mRNA_8401 0.89 -0.4
1,132,694 + 16769 mRNA_8401 0.89 1.9
1,132,694 + 16769 mRNA_8401 0.89 0.9
1,132,760 - -1.5
1,132,863 - -2.1
1,132,988 - -0.0
1,133,103 + 0.0
1,133,123 - -1.3
1,133,131 + -2.0
1,133,150 - 0.4
1,133,165 + 0.7
1,133,167 + -1.7
1,133,189 + 0.3
1,133,398 + 16770 mRNA_8402 0.27 0.8
1,133,400 - 16770 mRNA_8402 0.27 -1.1
1,133,454 + 16770 mRNA_8402 0.32 1.5
1,133,943 + 16770 mRNA_8402 0.75 1.2
1,133,947 - 16770 mRNA_8402 0.75 0.6