Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8375

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8374: 16742 - KOG0053 Cystathionine beta-lyases/cystathionine gamma-synthases, at 1061726 to 1063499 16742 mRNA_8375: 16743 - HMMPfam-Velvet factor-PF11754, at 1064293 to 1065552 16743 mRNA_8376: 16744 - Hypothetical Protein, at 1065771 to 1066578 16744

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,063,578 - 1.3
1,063,840 + 1.7
1,063,860 - 1.5
1,063,875 + -1.1
1,063,877 - -0.5
1,064,313 + -0.9
1,064,321 - 0.3
1,064,590 + 16743 mRNA_8375 0.24 0.6
1,064,614 - 16743 mRNA_8375 0.25 0.9
1,064,644 + 16743 mRNA_8375 0.28 -0.1
1,064,888 - 16743 mRNA_8375 0.47 -0.9
1,065,071 - 16743 mRNA_8375 0.62 0.3
1,065,106 - 16743 mRNA_8375 0.65 -0.1
1,065,381 - 16743 mRNA_8375 0.86 -1.4
1,065,636 - 1.1
1,065,669 + -2.6
1,065,670 - -0.8
1,065,742 + -0.5
1,065,784 - -0.3
1,065,795 - -0.7
1,066,372 + 16744 mRNA_8376 0.74 0.4