Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8357

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8356: 16724 - K13985 NAPEPLD N-acyl-phosphatidylethanolamine-hydrolysing phospholipase D, at 1018843 to 1020921 16724 mRNA_8357: 16725 - K01739 metB cystathionine gamma-synthase, at 1021277 to 1023018 16725 mRNA_8358: 16726 - HMMPfam-Bin/amphiphysin/Rvs domain for vesicular trafficking-PF10455,HMMPfam-Fungal specific transcription factor domain-PF11951,SMART--SM00721,SUPERFAMILY--SSF103657, at 1023187 to 1029066 16726

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,020,317 - 16724 mRNA_8356 0.71 0.6
1,020,345 + 16724 mRNA_8356 0.72 1.8
1,020,455 + 16724 mRNA_8356 0.78 -0.0
1,020,581 - 16724 mRNA_8356 0.84 0.6
1,020,588 + 16724 mRNA_8356 0.84 -0.1
1,020,600 - 16724 mRNA_8356 0.85 0.6
1,020,752 + 0.4
1,020,993 - 1.6
1,021,056 - 1.8
1,021,082 + 0.3
1,021,157 - 0.2
1,021,158 + 0.3
1,021,169 + -0.1
1,021,196 - 2.1
1,021,208 - 0.7
1,021,246 + -0.2
1,021,249 - -0.3
1,021,338 + 0.5
1,021,378 - 0.6
1,021,782 + 16725 mRNA_8357 0.29 -1.4
1,021,950 - 16725 mRNA_8357 0.39 -0.5
1,021,974 - 16725 mRNA_8357 0.40 -0.9
1,022,143 - 16725 mRNA_8357 0.50 -1.1
1,022,259 - 16725 mRNA_8357 0.56 -0.3
1,022,378 - 16725 mRNA_8357 0.63 -0.5
1,022,445 - 16725 mRNA_8357 0.67 -1.0
1,022,672 - 16725 mRNA_8357 0.80 0.6
1,022,794 - 16725 mRNA_8357 0.87 -1.9
1,022,818 + 16725 mRNA_8357 0.88 0.1
1,023,877 - 16726 mRNA_8358 0.12 -0.4
1,023,910 - 16726 mRNA_8358 0.12 0.0
1,023,947 + 16726 mRNA_8358 0.13 0.4
1,024,004 + 16726 mRNA_8358 0.14 -2.5