Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8324

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8323: 16691 - HMMPfam-Abscisic acid G-protein coupled receptor-PF12430,HMMPfam-Protein of unknown function (DUF3735)-PF12537, at 938985 to 941043 16691 mRNA_8324: 16692 - K14026 SEL1, SEL1L SEL1 protein, at 941199 to 945074 16692 mRNA_8325: 16693 - KOG1688 Golgi proteins involved in ER retention (RER), at 945635 to 946237 16693

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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940,380 - 16691 mRNA_8323 0.68 0.3
940,523 + 16691 mRNA_8323 0.75 2.4
940,551 + 16691 mRNA_8323 0.76 1.0
940,784 - 16691 mRNA_8323 0.87 -1.0
940,785 - 16691 mRNA_8323 0.87 -0.2
940,828 + 16691 mRNA_8323 0.90 -2.0
940,844 + 0.2
940,916 + 1.9
940,940 + -2.5
940,980 + -1.0
941,079 + -0.3
941,081 - 0.9
941,131 - -1.5
941,134 + -0.0
941,149 + -0.3
941,427 + 1.8
941,431 + -1.7
941,833 - 16692 mRNA_8324 0.16 -0.1
941,833 + 16692 mRNA_8324 0.16 0.1
942,001 - 16692 mRNA_8324 0.21 0.2
942,596 + 16692 mRNA_8324 0.36 -0.8
943,339 - 16692 mRNA_8324 0.55 -1.0
943,499 - 16692 mRNA_8324 0.59 0.0
943,625 - 16692 mRNA_8324 0.63 -0.4
943,777 + 16692 mRNA_8324 0.67 -1.0
944,361 - 16692 mRNA_8324 0.82 -0.3
944,643 - 16692 mRNA_8324 0.89 -0.2
944,803 + -0.3
945,120 + 2.0
945,430 + 0.3
945,995 - 16693 mRNA_8325 0.60 -0.3