Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8291

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8290: 16658 - K02327 POLD1 DNA polymerase delta subunit 1, at 858193 to 863054 16658 mRNA_8291: 16659 - K00851 E2.7.1.12, gntK, idnK gluconokinase, at 863269 to 864250 16659 mRNA_8292: 16660 - HMMPfam-OHCU decarboxylase-PF09349,SUPERFAMILY--SSF158694, at 864726 to 865561 16660

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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863,112 - -1.9
863,112 - -0.1
863,114 + 1.3
863,115 + 1.6
863,120 - -0.4
863,261 + 2.0
863,263 - 0.1
863,587 + 16659 mRNA_8291 0.32 -0.9
863,679 - 16659 mRNA_8291 0.42 0.8
863,854 + 16659 mRNA_8291 0.60 0.0
864,104 - 16659 mRNA_8291 0.85 1.0
864,117 + 16659 mRNA_8291 0.86 -0.4
864,232 + 1.1
864,236 + -0.3
864,377 - -0.7
864,398 - -1.5
864,410 - 0.1
864,413 + 0.6
864,535 + -0.0
864,555 + 0.8
864,612 + 1.4
864,660 - 0.4
864,715 - 0.1
864,831 + 16660 mRNA_8292 0.13 -1.1
864,864 + 16660 mRNA_8292 0.17 -0.7
864,867 - 16660 mRNA_8292 0.17 -2.4
864,870 - 16660 mRNA_8292 0.17 1.4
864,876 - 16660 mRNA_8292 0.18 -1.3
864,898 + 16660 mRNA_8292 0.21 -4.0
864,981 + 16660 mRNA_8292 0.31 0.4
865,030 + 16660 mRNA_8292 0.36 0.6
865,094 + 16660 mRNA_8292 0.44 0.7