Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8286

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8285: 16653 - HMMPfam-PH domain-PF00169,ProSiteProfiles-PH domain profile.-PS50003,SMART-Pleckstrin homology domain.-SM00233,SUPERFAMILY--SSF50729, at 841143 to 845451 16653 mRNA_8286: 16654 - HMMPfam-GATA zinc finger-PF00320,ProSiteProfiles-GATA-type zinc finger domain profile.-PS50114,SMART-zinc finger binding to DNA consensus sequence [AT]GATA[AG]-SM00401,SUPERFAMILY--SSF57716, at 845921 to 849990 16654 mRNA_8287: 16655 - K10245 ELO2 fatty acid elongase 2, at 850853 to 852932 16655

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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845,670 - -0.3
846,068 + -0.1
846,533 - 16654 mRNA_8286 0.15 0.6
847,157 - 16654 mRNA_8286 0.30 0.2
848,014 + 16654 mRNA_8286 0.51 -0.4
848,460 + 16654 mRNA_8286 0.62 -1.3
849,487 + 16654 mRNA_8286 0.88 1.1
849,487 + 16654 mRNA_8286 0.88 -0.2
850,218 - 0.3
850,244 - -0.5
850,246 - 0.3
850,373 - -0.2
850,373 - -0.1
850,387 + 1.5
850,387 - -0.1
850,389 + 2.2
850,391 + 0.9
850,392 - 0.5
850,402 + 0.5
850,403 + 1.4
850,405 + 0.3
850,406 - -0.3
850,407 + 0.5
850,412 + -0.2
850,414 + 1.1
850,414 + -1.0
850,419 - -1.1
850,419 - 0.7
850,420 + 1.8
850,420 + -2.0
850,422 - -0.9
850,424 + -0.6
850,440 + 1.0
850,456 + 0.5
850,497 + 1.5
850,497 - -2.7
850,510 + 1.8
850,510 + -0.0
850,522 + -0.8
850,525 - -1.0
850,527 + 0.4
850,530 + -2.3
850,531 - 0.6
850,539 - 0.2
850,676 - -0.8
850,686 - 0.2
850,793 - -1.2