Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8251

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8250: 16618 - K17069 MET17 O-acetylhomoserine/O-acetylserine sulfhydrylase, at 764459 to 766227 16618 mRNA_8251: 16619 - HMMPfam-SacI homology domain-PF02383,ProSiteProfiles-Sac phosphatase domain profile.-PS50275, at 766880 to 770400 16619 mRNA_8252: 16620 - HMMPfam-Domain of unknown function (DUF4451)-PF14616, at 770970 to 773846 16620

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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765,908 + 16618 mRNA_8250 0.82 0.2
766,023 + 16618 mRNA_8250 0.88 -0.5
766,059 + 2.5
766,071 - -0.3
766,201 - -3.7
766,214 + 1.1
766,284 - 1.3
766,331 - -1.2
766,340 - -0.2
766,358 - 0.8
766,505 + -0.8
766,651 - 0.2
766,655 + -0.4
766,667 + 0.8
766,958 - -0.1
767,244 - 16619 mRNA_8251 0.10 0.2
767,251 - 16619 mRNA_8251 0.11 -1.5
767,399 + 16619 mRNA_8251 0.15 -2.5
767,961 - 16619 mRNA_8251 0.31 -0.4
768,124 + 16619 mRNA_8251 0.35 -0.3
768,250 + 16619 mRNA_8251 0.39 0.4
768,269 + 16619 mRNA_8251 0.39 0.3
768,519 + 16619 mRNA_8251 0.47 1.0
768,540 + 16619 mRNA_8251 0.47 1.6
768,791 - 16619 mRNA_8251 0.54 0.9
768,817 + 16619 mRNA_8251 0.55 -0.4
769,109 - 16619 mRNA_8251 0.63 1.4
769,227 + 16619 mRNA_8251 0.67 -1.9
769,319 + 16619 mRNA_8251 0.69 -0.9
769,396 + 16619 mRNA_8251 0.71 0.5
770,315 - 0.2
770,404 + -1.5
770,427 - -1.3
770,438 + -0.0
770,445 + 0.0
770,453 + 2.1
770,461 + 0.7
770,461 - 0.2
770,581 - 0.5
770,584 - -0.4
770,736 - 0.7
770,748 - 0.3
770,749 - 0.3
770,750 + 0.9
770,778 + 0.3
770,913 + 4.8
770,916 - -0.6
770,923 - 1.8
771,059 - 1.7
771,254 - 1.5