Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8239

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8238: 16606 - KOG2551 Phospholipase/carboxyhydrolase, at 736874 to 737919 16606 mRNA_8239: 16607 - K00101 E1.1.2.3, lldD L-lactate dehydrogenase (cytochrome), at 738207 to 740675 16607 mRNA_8240: 16608 - K14350 AADACL2 arylacetamide deacetylase-like 2, at 740976 to 744696 16608

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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737,317 + 16606 mRNA_8238 0.42 -0.8
737,472 + 16606 mRNA_8238 0.57 0.4
737,573 - 16606 mRNA_8238 0.67 -1.6
737,618 + 16606 mRNA_8238 0.71 -1.4
737,725 - 16606 mRNA_8238 0.81 0.4
737,832 - -0.3
737,838 + 0.9
737,849 - 0.3
737,854 + 1.5
737,857 - -3.1
737,868 + -1.0
737,900 + 0.4
737,902 - 0.8
737,957 + 0.6
737,975 - 1.0
737,976 - 0.3
737,979 + 0.0
737,987 + 0.1
737,989 - 0.4
737,994 - -0.1
738,011 + -0.2
738,016 + 0.1
738,027 - 0.5
738,045 + -0.2
738,048 - -0.4
738,050 - 1.3
738,054 + 0.0
738,072 - -0.8
738,135 + -0.9
738,174 - -0.4
738,179 + -1.8
738,204 - -0.4
738,207 + -2.4
738,215 + -0.2
738,337 + 1.3
738,473 + 16607 mRNA_8239 0.11 0.2
738,488 + 16607 mRNA_8239 0.11 -3.1
738,618 - 16607 mRNA_8239 0.17 -2.3
739,050 - 16607 mRNA_8239 0.34 2.0
739,210 + 16607 mRNA_8239 0.41 -0.2
739,229 - 16607 mRNA_8239 0.41 -0.8
739,343 + 16607 mRNA_8239 0.46 0.4
739,930 - 16607 mRNA_8239 0.70 0.3
740,086 - 16607 mRNA_8239 0.76 -0.7
740,230 + 16607 mRNA_8239 0.82 2.5
740,522 - -0.6
740,662 + -0.1
740,685 + -1.3
740,809 - -0.2
740,811 - -0.7
740,819 - -0.4
740,834 - -0.7
740,946 + -0.0
740,984 - -3.5
741,123 + 1.2
741,435 - 16608 mRNA_8240 0.12 0.5