Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8167

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8166: 16534 - BLAST receptor-activated Ca2+-permeable cation channel [Aur..., at 571164 to 574503 16534 mRNA_8167: 16535 - K04350 RASGRP1 RAS guanyl-releasing protein 1, at 574672 to 578875 16535

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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573,793 - 16534 mRNA_8166 0.79 0.0
573,943 + 16534 mRNA_8166 0.83 0.7
574,588 + -3.1
574,592 + 0.5
574,700 - 0.9
574,817 - 0.1
574,887 + -0.6
575,030 + -1.9
575,205 - 16535 mRNA_8167 0.13 1.1
575,259 - 16535 mRNA_8167 0.14 0.6
575,470 + 16535 mRNA_8167 0.19 0.6
575,645 + 16535 mRNA_8167 0.23 -1.6
575,723 + 16535 mRNA_8167 0.25 -0.7
575,831 - 16535 mRNA_8167 0.28 -0.4
575,931 + 16535 mRNA_8167 0.30 -0.1
575,981 - 16535 mRNA_8167 0.31 1.2
576,033 - 16535 mRNA_8167 0.32 0.0
576,053 - 16535 mRNA_8167 0.33 -0.2
576,064 + 16535 mRNA_8167 0.33 -0.1
576,214 + 16535 mRNA_8167 0.37 0.3
576,463 + 16535 mRNA_8167 0.43 -0.6
576,492 + 16535 mRNA_8167 0.43 -0.1
576,540 - 16535 mRNA_8167 0.44 0.3
576,579 - 16535 mRNA_8167 0.45 0.3
576,666 - 16535 mRNA_8167 0.47 0.2
576,789 - 16535 mRNA_8167 0.50 3.0
576,793 - 16535 mRNA_8167 0.50 0.4
577,312 + 16535 mRNA_8167 0.63 1.2
577,390 + 16535 mRNA_8167 0.65 -1.0
577,422 - 16535 mRNA_8167 0.65 1.2
577,623 + 16535 mRNA_8167 0.70 0.4
578,628 + 0.6
578,756 + 0.9
579,086 + 1.6
579,181 - -0.8
579,182 - -0.8
579,184 + -0.3
579,187 - -0.3
579,199 + -0.6
579,316 - -1.5
579,324 - 1.4
579,341 + 0.7
579,620 - 0.3
579,643 - -0.7
579,779 + 0.8
579,816 + 2.0