Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8157

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8156: 16524 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 545872 to 548769 16524 mRNA_8157: 16525 - ProSiteProfiles-DOMON domain profile.-PS50836,ProSiteProfiles-Cytochrome b561 domain profile.-PS50939,SMART-Cytochrome b-561 / ferric reductase transmembrane domain.-SM00665,SUPERFAMILY--SSF49344, at 549657 to 551853 16525 mRNA_8158: 16526 - K14004 SEC13 protein transport protein SEC13, at 552046 to 553498 16526

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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548,792 - 0.3
548,801 + 0.5
548,823 + -0.1
548,843 - -0.2
548,846 - 0.8
548,847 - 0.1
548,850 + -0.4
548,860 + -2.2
548,863 + 0.3
548,865 + 0.9
548,940 - -0.5
548,961 - -0.6
548,963 - 0.4
548,964 - -1.3
548,966 + 0.6
548,973 - 0.3
548,974 - 0.1
548,987 + 0.5
548,990 + -1.3
548,992 + -0.1
548,995 - -1.0
549,025 - -1.0
549,025 - 0.1
549,027 + 0.4
549,029 - 0.5
549,030 - 1.4
549,036 + 1.7
549,044 + -1.0
549,045 + 0.5
549,059 - 1.1
549,064 + 0.4
549,064 + 0.0
549,108 + 1.0
549,109 + -0.6
549,109 - 0.1
549,140 - 0.3
549,143 - 0.1
549,207 + -1.3
549,230 + -0.3
549,275 + -0.4
549,276 + 1.4
549,285 + -0.1
549,286 - -0.4
549,287 - -0.7
549,291 - -0.2
549,293 - -1.0
549,293 - -0.3
549,297 - -1.1
549,298 - 0.2
549,299 + -0.8
549,299 - -0.0
549,300 + -0.6
549,302 - -0.0
549,314 - -0.3
549,323 + 0.5
549,324 + 1.4
549,332 - 0.6
549,333 - -0.7
549,333 - 0.4
549,334 + 1.3
549,335 + -1.4
549,341 + -0.0
549,346 + -1.4
549,349 + -2.7
549,361 + 2.4
549,364 + 0.8
549,364 - -0.3
549,405 - -0.6
549,406 + -0.7
549,419 - -0.9
549,423 - -1.1
549,424 + 0.4
549,424 - 0.5
549,426 + -0.9
549,429 - -2.5
549,430 - -0.3
549,435 + -0.4
549,435 - -3.0
549,440 + 0.6
549,441 + -0.3
549,469 + 0.5
549,482 - -0.0
549,566 - 1.3
549,576 - -1.1
549,595 + -1.7
549,597 - -1.0
549,598 + -0.0
549,610 - 0.1
549,616 + -0.9
549,619 + -0.8
549,624 + 2.4
549,625 - 1.2
549,634 + 0.2
549,642 - 1.6
549,645 + -0.4
549,654 + -0.0
549,659 - -1.4
549,672 - 0.2
549,682 - 0.3
549,685 - -1.6
549,686 + -1.0
549,687 - -2.3
549,689 + 1.8
549,692 + 0.8
549,700 - -1.5
549,701 + -0.6
549,713 + -0.6
549,713 + 2.4
549,746 + 0.8
549,754 + 0.6
549,779 - 0.6
549,822 - -1.4
549,826 - 0.2
549,835 + 0.1
549,840 - 0.7
549,842 - 0.9
549,847 + 0.0
549,850 - 0.3
549,853 - 2.0
549,854 + 0.1
549,854 - 1.0
549,856 - 0.6
549,859 - 2.0
549,860 + -0.6
549,862 - 0.3
549,862 - -1.1
549,869 + 0.1
549,871 + 1.6
549,871 + 0.6
549,873 - 0.3
549,875 + -1.0
549,876 - -0.6
549,877 + 16525 mRNA_8157 0.10 0.2
549,878 + 16525 mRNA_8157 0.10 -0.3
549,879 + 16525 mRNA_8157 0.10 -0.3
549,881 + 16525 mRNA_8157 0.10 0.4
549,881 + 16525 mRNA_8157 0.10 0.8
549,881 - 16525 mRNA_8157 0.10 0.1
549,883 + 16525 mRNA_8157 0.10 0.9
549,921 - 16525 mRNA_8157 0.12 -0.3
549,923 - 16525 mRNA_8157 0.12 0.2
549,930 + 16525 mRNA_8157 0.12 0.4
549,931 - 16525 mRNA_8157 0.12 -0.2
549,936 - 16525 mRNA_8157 0.13 1.9
549,941 + 16525 mRNA_8157 0.13 0.1
549,941 + 16525 mRNA_8157 0.13 0.5
549,944 - 16525 mRNA_8157 0.13 -0.7
549,946 + 16525 mRNA_8157 0.13 0.1
549,950 - 16525 mRNA_8157 0.13 1.8
549,950 + 16525 mRNA_8157 0.13 -0.1
549,958 - 16525 mRNA_8157 0.14 1.0
549,961 + 16525 mRNA_8157 0.14 0.1
549,971 - 16525 mRNA_8157 0.14 1.7
549,971 + 16525 mRNA_8157 0.14 0.1
549,972 + 16525 mRNA_8157 0.14 1.0
549,976 - 16525 mRNA_8157 0.15 0.4
550,003 - 16525 mRNA_8157 0.16 -0.3
550,011 - 16525 mRNA_8157 0.16 -0.1
550,012 - 16525 mRNA_8157 0.16 -0.0
550,014 - 16525 mRNA_8157 0.16 0.3
550,014 - 16525 mRNA_8157 0.16 1.1
550,016 - 16525 mRNA_8157 0.16 0.1
550,021 + 16525 mRNA_8157 0.17 -0.2
550,022 + 16525 mRNA_8157 0.17 -1.0
550,026 - 16525 mRNA_8157 0.17 1.3
550,028 - 16525 mRNA_8157 0.17 -0.4
550,029 - 16525 mRNA_8157 0.17 -0.7
550,029 - 16525 mRNA_8157 0.17 0.8
550,030 - 16525 mRNA_8157 0.17 -1.2
550,030 - 16525 mRNA_8157 0.17 -0.6
550,034 + 16525 mRNA_8157 0.17 0.1
550,035 + 16525 mRNA_8157 0.17 0.5
550,048 - 16525 mRNA_8157 0.18 -1.0
550,048 - 16525 mRNA_8157 0.18 0.6
550,048 - 16525 mRNA_8157 0.18 -0.4
550,051 + 16525 mRNA_8157 0.18 -0.9
550,056 - 16525 mRNA_8157 0.18 -0.1
550,062 - 16525 mRNA_8157 0.18 -0.2
550,064 - 16525 mRNA_8157 0.19 0.3
550,064 - 16525 mRNA_8157 0.19 1.8
550,064 - 16525 mRNA_8157 0.19 -0.1
550,084 - 16525 mRNA_8157 0.19 -0.2
550,085 + 16525 mRNA_8157 0.19 0.2
550,086 + 16525 mRNA_8157 0.20 0.8
550,086 + 16525 mRNA_8157 0.20 -1.5
550,103 - 16525 mRNA_8157 0.20 1.3
550,106 - 16525 mRNA_8157 0.20 2.1
550,117 - 16525 mRNA_8157 0.21 2.5
550,125 - 16525 mRNA_8157 0.21 0.8
550,128 + 16525 mRNA_8157 0.21 0.2
550,140 - 16525 mRNA_8157 0.22 0.5
550,146 + 16525 mRNA_8157 0.22 -1.4
550,150 + 16525 mRNA_8157 0.22 0.7
550,151 - 16525 mRNA_8157 0.22 0.8
550,157 + 16525 mRNA_8157 0.23 -0.4
550,161 - 16525 mRNA_8157 0.23 0.7
550,161 - 16525 mRNA_8157 0.23 -0.1
550,165 - 16525 mRNA_8157 0.23 0.4
550,165 - 16525 mRNA_8157 0.23 0.4
550,169 - 16525 mRNA_8157 0.23 0.0
550,174 - 16525 mRNA_8157 0.24 0.6
550,178 - 16525 mRNA_8157 0.24 -0.2
550,178 - 16525 mRNA_8157 0.24 -0.1
550,180 - 16525 mRNA_8157 0.24 0.1
550,184 - 16525 mRNA_8157 0.24 1.2
550,185 + 16525 mRNA_8157 0.24 0.9
550,192 - 16525 mRNA_8157 0.24 0.4
550,203 - 16525 mRNA_8157 0.25 -0.3
550,208 + 16525 mRNA_8157 0.25 -1.5
550,208 + 16525 mRNA_8157 0.25 0.3
550,217 - 16525 mRNA_8157 0.25 0.3
550,223 - 16525 mRNA_8157 0.26 -0.6
550,227 - 16525 mRNA_8157 0.26 0.7
550,228 + 16525 mRNA_8157 0.26 -0.7
550,230 + 16525 mRNA_8157 0.26 -0.9
550,232 - 16525 mRNA_8157 0.26 0.3
550,238 + 16525 mRNA_8157 0.26 -2.9
550,247 - 16525 mRNA_8157 0.27 -2.0
550,262 + 16525 mRNA_8157 0.28 -0.4
550,268 - 16525 mRNA_8157 0.28 0.8
550,289 + 16525 mRNA_8157 0.29 0.3
550,290 - 16525 mRNA_8157 0.29 0.3
550,290 + 16525 mRNA_8157 0.29 3.5
550,297 - 16525 mRNA_8157 0.29 0.1
550,297 - 16525 mRNA_8157 0.29 -0.8
550,297 - 16525 mRNA_8157 0.29 2.4
550,307 - 16525 mRNA_8157 0.30 2.0
550,307 - 16525 mRNA_8157 0.30 -0.2
550,315 + 16525 mRNA_8157 0.30 -0.4
550,321 - 16525 mRNA_8157 0.30 1.3
550,322 - 16525 mRNA_8157 0.30 0.0
550,330 + 16525 mRNA_8157 0.31 -0.5
550,330 - 16525 mRNA_8157 0.31 0.9
550,330 + 16525 mRNA_8157 0.31 -0.2
550,331 - 16525 mRNA_8157 0.31 0.9
550,332 - 16525 mRNA_8157 0.31 1.2
550,334 - 16525 mRNA_8157 0.31 0.4
550,339 + 16525 mRNA_8157 0.31 -0.5
550,369 - 16525 mRNA_8157 0.32 2.5
550,369 + 16525 mRNA_8157 0.32 -0.5
550,374 - 16525 mRNA_8157 0.33 0.2
550,399 - 16525 mRNA_8157 0.34 -3.1
550,452 - 16525 mRNA_8157 0.36 -0.1
550,473 + 16525 mRNA_8157 0.37 0.8
550,478 - 16525 mRNA_8157 0.37 0.5
550,503 - 16525 mRNA_8157 0.39 1.1
550,506 + 16525 mRNA_8157 0.39 -0.2
550,509 + 16525 mRNA_8157 0.39 0.4
550,529 - 16525 mRNA_8157 0.40 0.1
550,595 - 16525 mRNA_8157 0.43 -0.3
550,772 - 16525 mRNA_8157 0.51 0.3
550,785 - 16525 mRNA_8157 0.51 0.5
551,404 - 16525 mRNA_8157 0.80 -1.5
551,491 + 16525 mRNA_8157 0.83 2.4
551,522 + 16525 mRNA_8157 0.85 -1.7
551,662 - 0.3
551,789 - -0.5
551,926 - 0.5
551,974 + 0.5
552,672 - 16526 mRNA_8158 0.43 0.5