Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8147

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8146: 16514 - HMMPfam-PH domain-PF00169,ProSiteProfiles-PH domain profile.-PS50003,SMART-Pleckstrin homology domain.-SM00233,SUPERFAMILY--SSF50729,SUPERFAMILY--SSF55753, at 523156 to 525295 16514 mRNA_8147: 16515 - HMMPfam-Enoyl-CoA hydratase/isomerase family-PF00378,SUPERFAMILY--SSF52096, at 525577 to 526736 16515 mRNA_8148: 16516 - HMMPfam-START domain-PF01852,ProSiteProfiles-START domain profile.-PS50848,SUPERFAMILY--SSF55961, at 527058 to 528382 16516

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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524,590 - 16514 mRNA_8146 0.67 -1.0
524,595 + 16514 mRNA_8146 0.67 -1.7
524,890 + 16514 mRNA_8146 0.81 0.5
524,935 - 16514 mRNA_8146 0.83 -0.9
525,163 + 0.0
525,179 - -0.1
525,310 - 0.3
525,335 + -1.2
525,338 - -0.8
525,353 - 0.3
525,354 - -0.1
525,474 - -2.1
525,615 - -3.4
525,657 + -0.8
525,766 + 16515 mRNA_8147 0.16 1.1
525,794 + 16515 mRNA_8147 0.19 -0.1
526,113 + 16515 mRNA_8147 0.46 1.3
526,194 - 16515 mRNA_8147 0.53 1.0
526,352 + 16515 mRNA_8147 0.67 1.0
526,530 - 16515 mRNA_8147 0.82 -1.0
526,683 - 1.6
526,712 + 0.2
526,812 - 0.1
526,814 - -0.1
526,835 - -1.2
526,835 - 0.5
526,835 + -0.2
526,850 + 0.0
526,860 - -0.9
527,471 - 16516 mRNA_8148 0.31 -0.6
527,721 + 16516 mRNA_8148 0.50 -0.2