Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8117

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8116: 16484 - K00949 thiN, TPK1, THI80 thiamine pyrophosphokinase, at 453564 to 454690 16484 mRNA_8117: 16485 - K06041 kdsD, kpsF arabinose-5-phosphate isomerase, at 455080 to 456482 16485 mRNA_8118: 16486 - Hypothetical Protein, at 456909 to 458986 16486

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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454,450 + 16484 mRNA_8116 0.79 -5.0
454,726 - -0.3
454,733 - 1.2
454,743 - 0.0
454,745 - 0.0
454,751 + -0.3
454,753 + 0.1
454,761 + -0.6
454,761 + -0.1
454,766 + -0.3
454,816 - 0.6
454,881 - 1.0
454,935 + 1.8
454,943 - -1.0
454,945 - -2.4
454,949 + -0.1
454,950 + 0.1
454,951 - -2.1
454,951 - 0.3
454,952 - 0.4
454,952 + 0.7
454,953 + -0.2
454,953 + 0.0
454,953 + -2.8
454,956 - 0.2
454,957 + -0.7
454,958 - -0.8
454,959 - 0.5
454,962 + -0.5
454,962 + -0.6
454,965 - 0.9
454,966 - 1.2
454,968 + -1.2
454,969 + 0.8
454,970 + -0.5
454,971 + -0.2
454,973 + 0.3
454,973 + 0.5
454,977 - 1.7
454,994 + 0.0
454,994 - -0.7
454,994 - -0.5
454,996 - 1.3
454,997 + -2.4
454,997 + 0.2
455,011 - 0.0
455,015 - -0.5
455,019 + -0.5
455,021 - 1.2
455,024 + -0.6
455,150 - 1.4
455,161 + 2.1
455,163 + 0.7
455,188 + -0.7
455,189 - 0.8
455,191 - 1.0
455,337 + 16485 mRNA_8117 0.18 0.2
455,592 + 16485 mRNA_8117 0.36 0.6
455,766 - 16485 mRNA_8117 0.49 3.6
455,896 + 16485 mRNA_8117 0.58 1.1
455,901 + 16485 mRNA_8117 0.59 -0.1
455,910 + 16485 mRNA_8117 0.59 1.7
456,205 - 16485 mRNA_8117 0.80 1.3
456,467 + 0.2
456,639 - -1.7
456,807 - -0.9
457,275 + 16486 mRNA_8118 0.18 0.3
457,276 - 16486 mRNA_8118 0.18 -0.2