Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8080

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8079: 16447 - BLAST PRMT5-domain-containing protein [Sanghuangporus baumii], at 372456 to 373383 16447 mRNA_8080: 16448 - HMMPfam-Alpha/beta hydrolase family-PF12697,SUPERFAMILY--SSF53474, at 373552 to 376166 16448 mRNA_8081: 16449 - K00905 BCKDK [3-methyl-2-oxobutanoate dehydrogenase (acetyl-transferring)] kinase, at 376342 to 377975 16449

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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372,675 - 16447 mRNA_8079 0.24 -0.5
373,117 - 16447 mRNA_8079 0.71 0.9
373,124 + 16447 mRNA_8079 0.72 0.5
373,263 - 16447 mRNA_8079 0.87 0.8
373,269 + 16447 mRNA_8079 0.88 -1.6
373,409 - -0.1
373,416 + 0.1
373,550 + -0.8
373,554 - 0.1
373,561 - 1.9
373,856 + 16448 mRNA_8080 0.12 0.5
374,267 - 16448 mRNA_8080 0.27 0.7
374,292 + 16448 mRNA_8080 0.28 0.5
374,445 + 16448 mRNA_8080 0.34 -0.5
374,877 - 16448 mRNA_8080 0.51 0.3
375,149 - 16448 mRNA_8080 0.61 -0.5
375,164 - 16448 mRNA_8080 0.62 -0.7
375,518 - 16448 mRNA_8080 0.75 0.1
376,215 - -0.6
376,227 - 0.2
376,336 - -0.8
376,351 - -0.6
376,351 + 0.0
376,479 - -0.1
376,496 + -0.9
376,894 + 16449 mRNA_8081 0.34 -3.2
376,930 + 16449 mRNA_8081 0.36 -3.2