Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8062

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8061: 16429 - BLAST protein of unknown function [Taphrina deformans PYCC ..., at 329115 to 329494 16429 mRNA_8062: 16430 - KOG1441 Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter, at 329647 to 331079 16430 mRNA_8063: 16431 - HMMPfam-Protein of unknown function (DUF3500)-PF12006, at 331587 to 333110 16431

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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328,827 - -0.7
328,852 - 0.6
329,278 + 16429 mRNA_8061 0.43 -0.8
329,672 - 1.5
329,724 + -0.9
330,266 + 16430 mRNA_8062 0.43 -0.3
330,315 + 16430 mRNA_8062 0.47 0.6
330,555 - 16430 mRNA_8062 0.63 -0.4
330,564 - 16430 mRNA_8062 0.64 0.4
330,607 - 16430 mRNA_8062 0.67 -0.3
330,723 - 16430 mRNA_8062 0.75 -0.8
330,750 - 16430 mRNA_8062 0.77 1.9
330,976 - -1.0
331,009 + 0.8
331,121 - -2.6
331,136 - -0.1
331,146 - -0.2
331,203 + -2.2
331,272 + 0.1
331,281 + 0.1
331,288 - 0.1
331,305 + -0.3
331,315 + 0.4
331,325 - -0.3
331,330 + 0.7
331,343 - -0.1
331,351 - -0.7
331,351 - -0.5
331,352 - -2.1
331,359 + 0.3
331,359 - -0.6
331,360 + -0.7
331,364 - 0.4
331,365 - 1.5
331,373 - 0.8
331,379 + 0.6
331,384 + -0.1
331,394 + 0.1
331,496 + -1.4
331,506 - 0.6
331,522 - 0.2
331,535 + 0.3
331,636 - -0.0
331,667 + 0.9
331,767 + 16431 mRNA_8063 0.12 0.4
331,780 - 16431 mRNA_8063 0.13 -0.2