Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8040

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8038: 16406 - K05757 ARPC1A_B actin related protein 2/3 complex, subunit 1A/1B, at 283766 to 285253 16406 mRNA_8039: 16407 - HMMPfam-DASH complex subunit Dad3-PF08656, at 285346 to 285719 16407 mRNA_8040: 16408 - BLAST putative Structural constituent of cytoskeleton [Rhod..., at 285968 to 287416 16408 mRNA_8041: 16409 - K13350 PXMP4, PMP24 peroxisomal membrane protein 4, at 287723 to 288731 16409

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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285,721 - -2.7
285,780 + 1.0
285,786 - 0.1
285,874 - -0.6
285,914 - 0.6
285,918 - 0.5
285,941 + -1.0
285,943 + 0.4
285,953 + -1.7
285,954 + -0.6
286,042 - -1.7
286,068 - 1.7
286,134 + 16408 mRNA_8040 0.11 -2.7
286,239 - 16408 mRNA_8040 0.19 -0.8
286,366 - 16408 mRNA_8040 0.27 -0.2
286,551 - 16408 mRNA_8040 0.40 -0.6
287,295 - 0.2
287,443 + 1.4
287,545 + 0.3
287,574 + 0.3
287,574 - -1.9
287,593 + -0.6
287,608 + -0.2
287,619 - 0.0
287,758 - -1.9
287,768 - -1.2
287,883 - 16409 mRNA_8041 0.16 -0.9
287,912 + 16409 mRNA_8041 0.19 -1.4
288,224 + 16409 mRNA_8041 0.50 -2.0