Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7986

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7985: 16353 - K15440 TAD1, ADAT1 tRNA-specific adenosine deaminase 1, at 149093 to 150954 16353 mRNA_7986: 16354 - ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 151105 to 154451 16354 mRNA_7987: 16355 - SUPERFAMILY--SSF144232, at 155023 to 156185 16355

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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150,121 - 16353 mRNA_7985 0.55 1.0
150,169 - 16353 mRNA_7985 0.58 2.0
150,555 - 16353 mRNA_7985 0.79 -0.3
150,972 + 0.5
151,412 - -0.5
151,417 + 1.2
151,461 + 16354 mRNA_7986 0.11 0.2
151,551 - 16354 mRNA_7986 0.13 -0.4
151,713 + 16354 mRNA_7986 0.18 -0.3
151,749 - 16354 mRNA_7986 0.19 1.1
151,859 - 16354 mRNA_7986 0.23 -1.1
152,093 - 16354 mRNA_7986 0.30 -0.4
152,188 - 16354 mRNA_7986 0.32 -0.3
152,189 + 16354 mRNA_7986 0.32 0.3
152,447 - 16354 mRNA_7986 0.40 0.1
152,542 + 16354 mRNA_7986 0.43 0.2
152,611 + 16354 mRNA_7986 0.45 -1.2
152,768 - 16354 mRNA_7986 0.50 -0.6
152,791 + 16354 mRNA_7986 0.50 -0.4
152,884 + 16354 mRNA_7986 0.53 -0.0
152,895 - 16354 mRNA_7986 0.53 -0.3
152,898 - 16354 mRNA_7986 0.54 -1.7
152,906 + 16354 mRNA_7986 0.54 -0.1
153,090 + 16354 mRNA_7986 0.59 -1.2
153,172 + 16354 mRNA_7986 0.62 -0.1
153,221 + 16354 mRNA_7986 0.63 -0.7
153,471 + 16354 mRNA_7986 0.71 -1.6
154,054 + 16354 mRNA_7986 0.88 -1.0
154,115 + 16354 mRNA_7986 0.90 0.6
154,181 - 0.6
154,234 - 3.1
154,330 + 0.3
154,445 - -1.9
154,480 - -0.0
154,493 + -0.7
154,493 + 0.5
154,504 - 1.1
154,690 - 1.7
154,796 - 0.7
154,921 - 0.6
154,933 + 0.2
155,081 - -1.9
155,406 + 16355 mRNA_7987 0.33 0.8