Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7954

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7953: 16321 - K13667 RUMI, KTELC1 protein glucosyltransferase, at 85721 to 88276 16321 mRNA_7954: 16322 - K01282 E3.4.14.- dipeptidyl aminopeptidase, at 88821 to 92965 16322 mRNA_7955: 16323 - K00128 ALDH aldehyde dehydrogenase (NAD+), at 93400 to 95869 16323

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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87,867 - 16321 mRNA_7953 0.84 0.7
87,958 - 16321 mRNA_7953 0.88 0.3
88,107 + -3.0
88,246 - 1.6
88,266 - 0.5
88,389 + -2.0
88,443 - 0.1
88,450 + 2.0
88,471 - -0.3
88,501 + 0.9
88,568 - -0.4
88,591 + 0.1
88,592 + 0.3
88,593 - -0.9
88,593 - -0.4
88,605 + -1.6
88,625 + 1.5
88,639 + -0.5
88,705 - 1.1
88,712 + -2.0
88,781 + 0.9
88,873 + -2.0
88,878 + 0.8
88,880 - -0.5
88,896 + -1.4
88,929 + -0.3
88,930 + 0.0
89,003 + -0.5
89,013 + 0.7
89,040 + 1.6
89,180 - -0.0
89,197 - 2.9
89,558 + 16322 mRNA_7954 0.18 1.3
89,664 + 16322 mRNA_7954 0.20 0.4
89,790 + 16322 mRNA_7954 0.23 0.8
89,921 + 16322 mRNA_7954 0.27 0.3
90,027 - 16322 mRNA_7954 0.29 0.0
90,250 - 16322 mRNA_7954 0.34 0.3
90,617 + 16322 mRNA_7954 0.43 -0.3
90,784 + 16322 mRNA_7954 0.47 -0.2
90,960 - 16322 mRNA_7954 0.52 0.5
90,964 + 16322 mRNA_7954 0.52 -1.4
91,083 + 16322 mRNA_7954 0.55 0.6
91,210 - 16322 mRNA_7954 0.58 0.1
91,228 + 16322 mRNA_7954 0.58 -1.9
91,317 - 16322 mRNA_7954 0.60 -0.4
91,651 + 16322 mRNA_7954 0.68 -1.3
91,672 + 16322 mRNA_7954 0.69 -1.1
91,988 + 16322 mRNA_7954 0.76 0.9
92,096 - 16322 mRNA_7954 0.79 1.0
92,142 - 16322 mRNA_7954 0.80 -0.1
92,215 - 16322 mRNA_7954 0.82 -0.0
92,246 + 16322 mRNA_7954 0.83 0.2
92,797 + -0.1
92,979 - 0.7
93,326 + 0.5
93,335 - -0.5
93,338 + -2.6
93,342 - -0.1
93,347 + 0.5
93,348 - -0.6
93,349 + 1.5
93,349 + 2.4
93,524 - -1.0
93,893 - 16323 mRNA_7955 0.20 1.3
93,956 - 16323 mRNA_7955 0.23 0.1