Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7951

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7950: 16318 - K04802 PCNA proliferating cell nuclear antigen, at 76989 to 79257 16318 mRNA_7951: 16319 - K09527 DNAJC7 DnaJ homolog subfamily C member 7, at 79808 to 82314 16319 mRNA_7952: 16320 - KOG0627 Heat shock transcription factor, at 82566 to 84687 16320

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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79,287 + 1.4
79,343 - 1.2
79,343 - 1.3
79,348 + 0.3
79,394 - 0.3
79,400 + 0.8
79,405 - 0.5
79,409 + 1.4
79,494 + 1.0
79,679 + 0.3
79,798 + 0.4
79,925 - -0.3
79,931 + 2.0
80,080 + 16319 mRNA_7951 0.11 -1.6
80,523 + 16319 mRNA_7951 0.29 2.1
80,524 - 16319 mRNA_7951 0.29 -0.3
80,912 - 16319 mRNA_7951 0.44 -0.3
80,930 - 16319 mRNA_7951 0.45 1.7
80,931 + 16319 mRNA_7951 0.45 1.8
81,061 - 16319 mRNA_7951 0.50 0.7
81,693 + 16319 mRNA_7951 0.75 -1.5
81,831 + 16319 mRNA_7951 0.81 1.7
82,009 + 16319 mRNA_7951 0.88 -0.3
82,091 + 0.5
82,124 + 0.3
82,124 + 0.6
82,228 + -1.3
82,317 - -1.4
82,547 + 0.4
82,592 - -2.3
82,721 - -3.1
83,236 - 16320 mRNA_7952 0.32 0.2
83,237 + 16320 mRNA_7952 0.32 1.3