Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7946

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7945: 16313 - HMMPfam-MYND finger-PF01753,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232, at 70630 to 71509 16313 mRNA_7946: 16314 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 71933 to 72812 16314 mRNA_7947: 16315 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 73248 to 74114 16315

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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70,955 + 16313 mRNA_7945 0.37 -0.1
70,974 - 16313 mRNA_7945 0.39 -0.3
70,989 + 16313 mRNA_7945 0.41 1.0
71,000 - 16313 mRNA_7945 0.42 0.2
71,117 - 16313 mRNA_7945 0.55 1.2
71,235 + 16313 mRNA_7945 0.69 -1.2
71,412 - 16313 mRNA_7945 0.89 1.9
71,421 + 16313 mRNA_7945 0.90 -0.8
71,534 - 2.3
71,580 - 2.4
71,586 + -0.4
71,601 + -0.5
72,077 - 16314 mRNA_7946 0.16 0.1
72,112 - 16314 mRNA_7946 0.20 0.7
72,118 - 16314 mRNA_7946 0.21 0.1
72,225 + 16314 mRNA_7946 0.33 -0.2
72,297 + 16314 mRNA_7946 0.41 1.7
72,304 + 16314 mRNA_7946 0.42 0.7
72,322 + 16314 mRNA_7946 0.44 -0.9
72,414 - 16314 mRNA_7946 0.55 -0.7
72,415 + 16314 mRNA_7946 0.55 -0.0
72,433 + 16314 mRNA_7946 0.57 -0.1
72,450 + 16314 mRNA_7946 0.59 0.5
72,471 - 16314 mRNA_7946 0.61 0.1
72,506 - 16314 mRNA_7946 0.65 1.2
72,571 + 16314 mRNA_7946 0.72 -1.1
72,573 - 16314 mRNA_7946 0.73 -0.4
72,579 - 16314 mRNA_7946 0.73 -0.3
72,580 + 16314 mRNA_7946 0.74 -0.2
72,740 - 0.4
72,815 + 0.2
72,859 + 1.3
72,903 - 1.1
72,907 - -0.8
73,058 + 0.4
73,063 - -0.6
73,074 + 2.1
73,187 - 0.4
73,222 + -0.9
73,236 + 0.7
73,339 + 16315 mRNA_7947 0.10 0.3
73,340 - 16315 mRNA_7947 0.11 1.2
73,357 - 16315 mRNA_7947 0.13 -0.1
73,529 - 16315 mRNA_7947 0.32 1.1
73,530 + 16315 mRNA_7947 0.33 0.8
73,537 + 16315 mRNA_7947 0.33 -0.6
73,779 - 16315 mRNA_7947 0.61 1.4
73,805 + 16315 mRNA_7947 0.64 0.6