Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7917

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7916: 16284 - K08683 HSD17B10 3-hydroxyacyl-CoA dehydrogenase / 3-hydroxy-2-methylbutyryl-CoA dehydrogenase, at 14684 to 15975 16284 mRNA_7917: 16285 - K18477 RMT2 type IV protein arginine methyltransferase, at 16350 to 18077 16285 mRNA_7918: 16286 - K15523 FN3KRP protein-ribulosamine 3-kinase, at 18272 to 19315 16286

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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15,555 + 16284 mRNA_7916 0.67 -0.2
15,576 + 16284 mRNA_7916 0.69 -0.8
15,823 - 16284 mRNA_7916 0.88 1.8
15,852 + 0.6
16,151 - -3.4
16,153 - 0.9
16,182 + 1.4
16,184 - 0.3
16,282 - 0.0
16,291 - -0.2
16,291 - 2.3
16,303 + 0.7
16,307 - 2.7
16,309 + 0.2
16,310 - -1.2
16,314 + 0.3
16,317 + 0.7
16,325 - 0.8
16,344 - -1.1
16,360 - 0.0
16,446 - -0.2
16,663 - 16285 mRNA_7917 0.18 0.5
16,997 - 16285 mRNA_7917 0.37 1.1
17,331 + 16285 mRNA_7917 0.57 1.0
17,480 - 16285 mRNA_7917 0.65 -2.0
17,684 - 16285 mRNA_7917 0.77 0.1
17,789 - 16285 mRNA_7917 0.83 -0.5
17,900 + 16285 mRNA_7917 0.90 1.7
18,055 + 1.4
18,058 - -0.0
18,219 + 1.2
18,322 - 1.9
18,351 - 1.7
18,358 - 0.3
18,417 - 16286 mRNA_7918 0.14 -1.6
18,480 - 16286 mRNA_7918 0.20 1.2
18,788 - 16286 mRNA_7918 0.49 -2.3
18,791 - 16286 mRNA_7918 0.50 1.8
18,915 + 16286 mRNA_7918 0.62 -0.6
18,916 - 16286 mRNA_7918 0.62 1.1
19,036 + 16286 mRNA_7918 0.73 -2.2