Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7912

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7911: 16279 - K03015 RPB7, POLR2G DNA-directed RNA polymerase II subunit RPB7, at 1441 to 2386 16279 mRNA_7912: 16280 - K11434 PRMT1 type I protein arginine methyltransferase, at 3147 to 4682 16280 mRNA_7913: 16281 - K00234 SDHA, SDH1 succinate dehydrogenase (ubiquinone) flavoprotein subunit, at 4859 to 7568 16281

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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2,601 - 0.1
2,624 + 0.3
2,636 - -2.0
2,650 - 0.8
2,781 + -0.8
2,783 - -1.6
2,928 + 1.6
2,928 + -3.7
2,928 + 0.1
2,929 + -0.2
2,934 - 0.5
2,947 - -0.5
2,951 + 0.5
2,951 + 0.5
2,954 - -1.8
3,110 + -0.1
3,236 + -2.4
3,375 - 16280 mRNA_7912 0.15 -1.6
4,339 - 16280 mRNA_7912 0.78 -1.1
4,534 + -2.0
4,534 + -0.2
4,545 + -0.0
4,548 - -2.3
4,702 - 1.1
4,955 + -1.0
5,024 + -0.1