Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7890

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7889: 16257 - Hypothetical Protein, at 1307542 to 1308171 16257 mRNA_7890: 16258 - K19564 CTR, HNM1 choline transport protein, at 1308906 to 1311166 16258 mRNA_7891: 16259 - Hypothetical Protein, at 1311426 to 1311848 16259

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,308,078 - 16257 mRNA_7889 0.85 -0.1
1,308,086 + 16257 mRNA_7889 0.86 1.6
1,308,222 - 0.1
1,308,365 - -1.1
1,308,365 - -0.4
1,308,412 + 0.6
1,308,500 + -0.9
1,308,652 - -0.8
1,308,655 - -1.6
1,308,661 - -1.0
1,308,673 + 0.0
1,308,675 + 0.0
1,308,678 + 0.6
1,308,691 + -0.0
1,308,696 - 0.2
1,308,717 - -0.1
1,308,732 + -1.8
1,308,745 + -0.1
1,308,767 - -0.0
1,308,784 - -1.7
1,308,787 - -0.3
1,308,788 + 0.5
1,308,788 - -0.7
1,308,800 + 1.2
1,308,800 + 1.5
1,308,809 + -1.3
1,308,811 + 0.4
1,308,815 + -0.6
1,308,818 + -0.0
1,308,848 + 0.2
1,308,926 - -0.4
1,308,972 + 0.3
1,308,974 - 0.9
1,308,974 + 0.7
1,308,977 + -0.2
1,309,072 + 0.5
1,309,111 - 0.1
1,309,123 - 1.9
1,309,129 - 0.9
1,309,169 + 16258 mRNA_7890 0.12 0.6
1,309,223 + 16258 mRNA_7890 0.14 -2.7
1,309,226 - 16258 mRNA_7890 0.14 -0.3
1,309,238 - 16258 mRNA_7890 0.15 -0.3
1,309,530 - 16258 mRNA_7890 0.28 1.8
1,309,539 - 16258 mRNA_7890 0.28 0.4
1,309,560 - 16258 mRNA_7890 0.29 1.4
1,309,569 + 16258 mRNA_7890 0.29 2.1
1,309,599 + 16258 mRNA_7890 0.31 1.1
1,309,600 + 16258 mRNA_7890 0.31 0.1
1,309,846 + 16258 mRNA_7890 0.42 0.3
1,309,964 - 16258 mRNA_7890 0.47 0.3
1,309,978 - 16258 mRNA_7890 0.47 -1.0
1,310,132 - 16258 mRNA_7890 0.54 0.9
1,310,184 - 16258 mRNA_7890 0.57 -0.0
1,310,248 + 16258 mRNA_7890 0.59 0.8
1,310,434 - 16258 mRNA_7890 0.68 -1.3
1,310,563 + 16258 mRNA_7890 0.73 0.1
1,310,593 + 16258 mRNA_7890 0.75 0.4
1,310,977 + 2.3
1,311,035 + 0.0
1,311,287 - 1.8
1,311,321 - 0.4
1,311,329 - -1.7
1,311,338 + 0.2
1,311,342 + 0.4
1,311,343 - 1.2
1,311,469 - 16259 mRNA_7891 0.10 -2.1
1,311,650 - 16259 mRNA_7891 0.53 1.0
1,311,777 - 16259 mRNA_7891 0.83 0.7