Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7862

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7861: 16229 - BLAST Transcriptional activator Myb [Leucoagaricus sp. SymC..., at 1243889 to 1246571 16229 mRNA_7862: 16230 - Hypothetical Protein, at 1246928 to 1249617 16230 mRNA_7863: 16231 - K11407 HDAC6 histone deacetylase 6, at 1249731 to 1253390 16231

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,246,437 - -0.5
1,246,567 - -0.9
1,246,568 + -0.9
1,246,592 + -0.2
1,246,657 + -0.8
1,246,672 - 0.1
1,246,705 + 0.9
1,246,822 + 1.4
1,246,845 + 0.2
1,246,849 + -0.6
1,246,868 + 0.0
1,247,014 - 1.9
1,247,015 - 0.3
1,247,025 - 0.5
1,247,030 + 1.3
1,247,033 + -1.0
1,247,037 + 0.6
1,247,056 - -1.1
1,247,187 + 0.6
1,247,195 + 0.1
1,247,196 - -1.3
1,247,217 + 16230 mRNA_7862 0.11 -0.2
1,247,326 + 16230 mRNA_7862 0.15 0.4
1,247,622 + 16230 mRNA_7862 0.26 1.1
1,247,797 + 16230 mRNA_7862 0.32 2.2
1,247,906 - 16230 mRNA_7862 0.36 -0.9
1,248,012 + 16230 mRNA_7862 0.40 1.1
1,248,767 - 16230 mRNA_7862 0.68 -0.7
1,248,827 + 16230 mRNA_7862 0.71 1.6
1,249,500 + -2.4
1,249,690 - 3.7
1,249,805 + 0.4
1,249,826 - -0.0
1,249,912 + 1.2