Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7861

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7860: 16228 - HMMPfam-Diacylglycerol kinase catalytic domain-PF00781,ProSiteProfiles-DAG-kinase catalytic (DAGKc) domain profile.-PS50146,SUPERFAMILY--SSF111331, at 1241909 to 1243568 16228 mRNA_7861: 16229 - BLAST Transcriptional activator Myb [Leucoagaricus sp. SymC..., at 1243889 to 1246571 16229 mRNA_7862: 16230 - Hypothetical Protein, at 1246928 to 1249617 16230

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,242,959 - 16228 mRNA_7860 0.63 0.1
1,242,978 - 16228 mRNA_7860 0.64 0.8
1,243,020 - 16228 mRNA_7860 0.67 0.3
1,243,033 - 16228 mRNA_7860 0.68 1.0
1,243,046 + 16228 mRNA_7860 0.68 3.1
1,243,053 + 16228 mRNA_7860 0.69 0.9
1,243,053 - 16228 mRNA_7860 0.69 0.4
1,243,068 - 16228 mRNA_7860 0.70 0.0
1,243,181 - 16228 mRNA_7860 0.77 1.3
1,243,181 - 16228 mRNA_7860 0.77 -0.4
1,243,325 - 16228 mRNA_7860 0.85 0.6
1,243,343 - 16228 mRNA_7860 0.86 -0.8
1,243,351 + 16228 mRNA_7860 0.87 1.7
1,243,516 - 0.3
1,243,627 + 1.0
1,243,632 - -1.1
1,243,775 + 0.0
1,243,778 + 2.3
1,243,787 - -0.1
1,243,787 - -1.8
1,243,788 - 0.6
1,243,788 + -0.3
1,243,802 - -0.8
1,243,821 + 1.5
1,243,828 - 2.8
1,243,973 + -2.4
1,243,984 + -0.5
1,244,263 + 16229 mRNA_7861 0.14 0.2
1,244,285 + 16229 mRNA_7861 0.15 0.4
1,244,397 - 16229 mRNA_7861 0.19 1.8
1,244,538 - 16229 mRNA_7861 0.24 -0.0
1,244,616 - 16229 mRNA_7861 0.27 -0.1
1,244,659 - 16229 mRNA_7861 0.29 1.3
1,245,429 + 16229 mRNA_7861 0.57 0.4
1,246,437 - -0.5
1,246,567 - -0.9
1,246,568 + -0.9
1,246,592 + -0.2
1,246,657 + -0.8
1,246,672 - 0.1
1,246,705 + 0.9
1,246,822 + 1.4
1,246,845 + 0.2
1,246,849 + -0.6
1,246,868 + 0.0
1,247,014 - 1.9
1,247,015 - 0.3
1,247,025 - 0.5
1,247,030 + 1.3
1,247,033 + -1.0
1,247,037 + 0.6
1,247,056 - -1.1
1,247,187 + 0.6
1,247,195 + 0.1
1,247,196 - -1.3
1,247,217 + 16230 mRNA_7862 0.11 -0.2
1,247,326 + 16230 mRNA_7862 0.15 0.4