Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7860

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7859: 16227 - Hypothetical Protein, at 1239161 to 1241466 16227 mRNA_7860: 16228 - HMMPfam-Diacylglycerol kinase catalytic domain-PF00781,ProSiteProfiles-DAG-kinase catalytic (DAGKc) domain profile.-PS50146,SUPERFAMILY--SSF111331, at 1241909 to 1243568 16228 mRNA_7861: 16229 - BLAST Transcriptional activator Myb [Leucoagaricus sp. SymC..., at 1243889 to 1246571 16229

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,240,910 + 16227 mRNA_7859 0.76 -0.7
1,241,092 + 16227 mRNA_7859 0.84 -0.2
1,241,092 - 16227 mRNA_7859 0.84 1.0
1,241,362 - -0.3
1,241,370 - 0.3
1,241,451 + -0.1
1,241,494 - 1.9
1,241,512 - 1.1
1,241,517 + 0.2
1,241,531 + 0.0
1,241,546 - -0.2
1,241,549 + 0.4
1,241,557 + 0.6
1,241,605 - 0.1
1,241,672 - 0.1
1,241,692 - -0.8
1,241,692 + 0.7
1,241,694 - -0.1
1,241,695 + 1.0
1,241,723 - 0.7
1,241,728 + 0.9
1,241,729 - -2.4
1,241,731 - -0.9
1,241,734 - 0.8
1,241,760 - 2.6
1,241,771 + -0.5
1,241,780 - 0.3
1,241,794 + 1.7
1,241,807 + -1.3
1,241,811 + 0.4
1,241,827 - 0.2
1,241,884 - 0.5
1,241,892 - 0.4
1,241,893 + -1.0
1,241,894 + -0.1
1,241,896 + 0.8
1,241,900 - -0.4
1,241,905 + -0.3
1,241,909 - 1.7
1,241,910 - 1.6
1,241,921 - 0.6
1,241,945 + 1.0
1,241,985 - -0.2
1,242,006 - -2.8
1,242,027 - 0.5
1,242,030 + 0.0
1,242,076 - 16228 mRNA_7860 0.10 1.1
1,242,077 - 16228 mRNA_7860 0.10 1.1
1,242,164 - 16228 mRNA_7860 0.15 0.4
1,242,166 - 16228 mRNA_7860 0.15 0.8
1,242,174 - 16228 mRNA_7860 0.16 -0.9
1,242,196 + 16228 mRNA_7860 0.17 -0.7
1,242,203 + 16228 mRNA_7860 0.18 -0.1
1,242,206 - 16228 mRNA_7860 0.18 0.1
1,242,616 + 16228 mRNA_7860 0.43 0.3
1,242,761 - 16228 mRNA_7860 0.51 0.9
1,242,866 + 16228 mRNA_7860 0.58 0.3
1,242,959 - 16228 mRNA_7860 0.63 0.1
1,242,978 - 16228 mRNA_7860 0.64 0.8
1,243,020 - 16228 mRNA_7860 0.67 0.3
1,243,033 - 16228 mRNA_7860 0.68 1.0
1,243,046 + 16228 mRNA_7860 0.68 3.1
1,243,053 + 16228 mRNA_7860 0.69 0.9
1,243,053 - 16228 mRNA_7860 0.69 0.4
1,243,068 - 16228 mRNA_7860 0.70 0.0
1,243,181 - 16228 mRNA_7860 0.77 1.3
1,243,181 - 16228 mRNA_7860 0.77 -0.4
1,243,325 - 16228 mRNA_7860 0.85 0.6
1,243,343 - 16228 mRNA_7860 0.86 -0.8
1,243,351 + 16228 mRNA_7860 0.87 1.7
1,243,516 - 0.3
1,243,627 + 1.0
1,243,632 - -1.1
1,243,775 + 0.0
1,243,778 + 2.3
1,243,787 - -0.1
1,243,787 - -1.8
1,243,788 - 0.6
1,243,788 + -0.3
1,243,802 - -0.8
1,243,821 + 1.5
1,243,828 - 2.8
1,243,973 + -2.4
1,243,984 + -0.5
1,244,263 + 16229 mRNA_7861 0.14 0.2
1,244,285 + 16229 mRNA_7861 0.15 0.4
1,244,397 - 16229 mRNA_7861 0.19 1.8
1,244,538 - 16229 mRNA_7861 0.24 -0.0