Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7761

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7760: 16128 - K05607 AUH methylglutaconyl-CoA hydratase, at 1005375 to 1006761 16128 mRNA_7761: 16129 - KOG1176 Acyl-CoA synthetase, at 1006948 to 1009515 16129 mRNA_7762: 16130 - K20302 TRAPPC3, BET3 trafficking protein particle complex subunit 3, at 1009645 to 1010524 16130

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,006,359 - 16128 mRNA_7760 0.71 0.4
1,006,387 + 16128 mRNA_7760 0.73 0.5
1,006,509 + 16128 mRNA_7760 0.82 1.1
1,006,516 - 16128 mRNA_7760 0.82 1.5
1,006,638 - 0.8
1,006,781 - -0.8
1,006,794 + 1.1
1,006,814 - -0.2
1,006,828 + 0.8
1,006,828 - -1.1
1,006,830 - -0.7
1,006,832 - -1.7
1,006,833 - -0.2
1,006,837 + -1.9
1,006,848 - 0.5
1,006,852 - 0.6
1,006,852 - -1.0
1,006,866 - 1.0
1,006,867 + -1.4
1,006,868 + 1.2
1,006,872 + 0.6
1,006,875 + -0.2
1,006,875 + 1.5
1,006,879 + -0.1
1,006,879 + 0.9
1,006,880 + 0.8
1,006,880 + -0.5
1,006,881 - 0.2
1,006,883 - 0.5
1,006,892 + 1.0
1,006,892 + 0.0
1,006,895 + -0.3
1,006,898 + 1.8
1,006,899 + 1.8
1,006,900 + 0.7
1,006,901 + 1.3
1,006,901 + -1.7
1,006,904 - 0.7
1,006,905 + -1.1
1,006,905 + 0.1
1,006,915 + -0.7
1,007,031 - -0.7
1,007,033 + -1.0
1,007,068 + 0.7
1,007,187 - -1.6
1,007,280 - 16129 mRNA_7761 0.13 0.4
1,007,585 + 16129 mRNA_7761 0.25 0.9
1,007,919 - 16129 mRNA_7761 0.38 -1.0
1,008,094 - 16129 mRNA_7761 0.45 0.1
1,008,215 - 16129 mRNA_7761 0.49 0.2
1,008,216 + 16129 mRNA_7761 0.49 1.4
1,008,220 + 16129 mRNA_7761 0.50 -0.6
1,008,511 + 16129 mRNA_7761 0.61 0.5
1,008,774 + 16129 mRNA_7761 0.71 2.4
1,008,796 - 16129 mRNA_7761 0.72 -2.4
1,008,898 + 16129 mRNA_7761 0.76 -1.1
1,008,898 - 16129 mRNA_7761 0.76 0.5
1,009,035 + 16129 mRNA_7761 0.81 -0.0
1,009,076 + 16129 mRNA_7761 0.83 0.0
1,009,106 - 16129 mRNA_7761 0.84 0.3
1,009,340 - -0.1
1,009,402 + 0.9
1,009,417 - 1.3
1,009,912 - 16130 mRNA_7762 0.30 -3.7