Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7719

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7718: 16086 - K08516 YKT6 synaptobrevin homolog YKT6, at 920015 to 921107 16086 mRNA_7719: 16087 - Hypothetical Protein, at 921427 to 923879 16087 mRNA_7720: 16088 - K03177 truB, PUS4, TRUB1 tRNA pseudouridine55 synthase, at 923963 to 925405 16088

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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921,156 + -0.6
921,161 + 1.1
921,163 - 0.2
921,188 + 2.1
921,317 - -0.1
921,361 - -1.3
921,441 - -0.7
921,463 + -1.4
921,484 + 1.4
921,615 + -1.9
921,713 + 16087 mRNA_7719 0.12 -0.4
921,754 + 16087 mRNA_7719 0.13 0.7
921,924 + 16087 mRNA_7719 0.20 0.1
921,934 - 16087 mRNA_7719 0.21 -0.4
921,943 - 16087 mRNA_7719 0.21 0.9
922,069 + 16087 mRNA_7719 0.26 2.3
922,086 + 16087 mRNA_7719 0.27 -0.7
922,199 - 16087 mRNA_7719 0.31 -0.2
922,208 + 16087 mRNA_7719 0.32 -0.3
922,221 - 16087 mRNA_7719 0.32 -1.4
922,242 + 16087 mRNA_7719 0.33 0.3
922,358 + 16087 mRNA_7719 0.38 0.8
922,499 - 16087 mRNA_7719 0.44 -0.3
922,504 + 16087 mRNA_7719 0.44 0.3
922,622 - 16087 mRNA_7719 0.49 1.0
922,759 + 16087 mRNA_7719 0.54 1.8
922,771 + 16087 mRNA_7719 0.55 -0.5
922,773 - 16087 mRNA_7719 0.55 -0.3
922,796 - 16087 mRNA_7719 0.56 0.1
922,802 + 16087 mRNA_7719 0.56 -1.0
922,975 + 16087 mRNA_7719 0.63 -0.1
923,540 - 16087 mRNA_7719 0.86 -1.7
923,541 + 16087 mRNA_7719 0.86 0.4
923,544 - 16087 mRNA_7719 0.86 -0.4
923,551 - 16087 mRNA_7719 0.87 -0.1
923,554 + 16087 mRNA_7719 0.87 -0.2
923,821 - 2.6
923,832 + 0.0
923,864 + -2.0
923,980 + 1.5
924,382 - 16088 mRNA_7720 0.29 -0.6
924,393 - 16088 mRNA_7720 0.30 0.1
924,571 + 16088 mRNA_7720 0.42 -0.0
924,668 - 16088 mRNA_7720 0.49 0.2
924,678 + 16088 mRNA_7720 0.50 0.4
924,716 - 16088 mRNA_7720 0.52 0.7
924,846 - 16088 mRNA_7720 0.61 -0.3
924,869 - 16088 mRNA_7720 0.63 2.2