Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7691

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7690: 16058 - BLAST proteophosphoglycan ppg4 [Moesziomyces aphidis DSM 70..., at 846247 to 848747 16058 mRNA_7691: 16059 - K10770 ALKBH8 alkylated DNA repair protein alkB homolog 8, at 849187 to 849939 16059 mRNA_7692: 16060 - HMMPfam-Cell division control protein 14, SIN component-PF08045, at 850554 to 851989 16060

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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848,233 - 16058 mRNA_7690 0.79 0.5
848,233 + 16058 mRNA_7690 0.79 0.4
848,330 - 16058 mRNA_7690 0.83 0.2
848,336 - 16058 mRNA_7690 0.84 -0.7
848,511 - 2.1
848,515 + -0.6
848,520 - 1.5
848,631 - -0.1
848,643 + 0.0
848,652 - -0.4
848,755 + 1.3
848,786 - 1.0
848,909 + -0.3
848,936 - 0.7
848,981 + 1.2
849,129 - 0.1
849,137 - -0.2
849,242 - 1.8
849,341 - 16059 mRNA_7691 0.20 0.0
849,385 - 16059 mRNA_7691 0.26 0.8
849,394 - 16059 mRNA_7691 0.27 0.0
849,399 - 16059 mRNA_7691 0.28 -0.2
849,471 + 16059 mRNA_7691 0.38 -0.9
849,506 + 16059 mRNA_7691 0.42 0.0
849,506 - 16059 mRNA_7691 0.42 0.3
849,594 + 16059 mRNA_7691 0.54 -0.2
849,830 + 16059 mRNA_7691 0.85 1.1
849,977 + -0.6
849,985 + 2.5
850,133 + -1.7
850,274 - 1.3
850,289 + 0.8
850,299 + 0.7
850,419 - -0.1
850,582 - -1.2
850,711 - 16060 mRNA_7692 0.11 1.0
850,732 + 16060 mRNA_7692 0.12 3.1
850,765 + 16060 mRNA_7692 0.15 -0.3