Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7690

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7689: 16057 - BLAST triacylglycerol lipase [Pochonia chlamydosporia 170], at 844796 to 845727 16057 mRNA_7690: 16058 - BLAST proteophosphoglycan ppg4 [Moesziomyces aphidis DSM 70..., at 846247 to 848747 16058 mRNA_7691: 16059 - K10770 ALKBH8 alkylated DNA repair protein alkB homolog 8, at 849187 to 849939 16059

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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845,281 + 16057 mRNA_7689 0.52 2.8
845,370 - 16057 mRNA_7689 0.62 -0.5
845,373 - 16057 mRNA_7689 0.62 -0.3
845,510 - 16057 mRNA_7689 0.77 -0.4
845,586 + 16057 mRNA_7689 0.85 -0.2
845,696 + -0.2
845,704 + 1.4
845,713 - 0.4
845,728 + 0.4
845,826 + -1.8
845,864 + 1.7
845,871 - -0.4
845,878 + 0.6
845,966 - 0.3
845,997 + -0.2
845,998 - -0.9
846,005 - 1.6
846,020 + -0.7
846,038 - 1.2
846,299 + -1.3
846,386 - 0.9
846,498 - 16058 mRNA_7690 0.10 -0.4
846,666 - 16058 mRNA_7690 0.17 -0.3
846,677 + 16058 mRNA_7690 0.17 1.7
846,854 - 16058 mRNA_7690 0.24 -1.5
846,854 - 16058 mRNA_7690 0.24 -0.1
846,854 - 16058 mRNA_7690 0.24 -1.5
846,870 + 16058 mRNA_7690 0.25 -1.6
846,873 + 16058 mRNA_7690 0.25 -0.6
847,023 + 16058 mRNA_7690 0.31 -0.4
847,177 + 16058 mRNA_7690 0.37 -0.4
847,183 + 16058 mRNA_7690 0.37 0.5
847,331 + 16058 mRNA_7690 0.43 0.7
847,641 - 16058 mRNA_7690 0.56 -1.1
847,747 - 16058 mRNA_7690 0.60 -0.3
847,755 - 16058 mRNA_7690 0.60 -0.2
847,811 + 16058 mRNA_7690 0.63 -1.2
847,899 + 16058 mRNA_7690 0.66 0.1
847,912 - 16058 mRNA_7690 0.67 -0.3
848,233 - 16058 mRNA_7690 0.79 0.5
848,233 + 16058 mRNA_7690 0.79 0.4
848,330 - 16058 mRNA_7690 0.83 0.2
848,336 - 16058 mRNA_7690 0.84 -0.7
848,511 - 2.1
848,515 + -0.6
848,520 - 1.5
848,631 - -0.1
848,643 + 0.0
848,652 - -0.4
848,755 + 1.3
848,786 - 1.0
848,909 + -0.3
848,936 - 0.7
848,981 + 1.2
849,129 - 0.1
849,137 - -0.2
849,242 - 1.8
849,341 - 16059 mRNA_7691 0.20 0.0
849,385 - 16059 mRNA_7691 0.26 0.8
849,394 - 16059 mRNA_7691 0.27 0.0
849,399 - 16059 mRNA_7691 0.28 -0.2
849,471 + 16059 mRNA_7691 0.38 -0.9
849,506 + 16059 mRNA_7691 0.42 0.0
849,506 - 16059 mRNA_7691 0.42 0.3
849,594 + 16059 mRNA_7691 0.54 -0.2