Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7652

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7651: 16019 - K03671 trxA thioredoxin 1, at 769234 to 769814 16019 mRNA_7652: 16020 - HMMPfam-XPG I-region-PF00867,PRINTS-Xeroderma pigmentosum group G/yeast RAD superfamily signature-PR00853,SMART-Xeroderma pigmentosum G I-region-SM00484,SUPERFAMILY--SSF47807,SUPERFAMILY--SSF88723, at 770131 to 772818 16020 mRNA_7653: 16021 - K15216 RRN3, TIFIA RNA polymerase I-specific transcription initiation factor RRN3, at 773095 to 776030 16021

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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769,177 - 1.3
769,194 + -0.3
769,320 - 16019 mRNA_7651 0.15 -0.9
769,340 - 16019 mRNA_7651 0.18 0.0
769,341 + 16019 mRNA_7651 0.18 -0.3
769,372 + 16019 mRNA_7651 0.24 -1.4
769,498 - 16019 mRNA_7651 0.45 0.7
769,941 - -0.6
770,072 + -0.1
770,243 + -3.5
770,281 + -0.3
770,373 - 0.6
770,386 - -0.7
770,681 + 16020 mRNA_7652 0.20 0.1
770,690 + 16020 mRNA_7652 0.21 -2.1
771,260 - 16020 mRNA_7652 0.42 0.6
771,295 + 16020 mRNA_7652 0.43 0.7
771,511 + 16020 mRNA_7652 0.51 -0.2
771,526 - 16020 mRNA_7652 0.52 -1.2
772,098 - 16020 mRNA_7652 0.73 0.4
772,100 + 16020 mRNA_7652 0.73 -0.9
772,288 + 16020 mRNA_7652 0.80 0.4
772,762 + -2.5
772,763 - 0.5
772,870 - 1.8
772,873 + 0.0
772,881 - 0.3
772,889 + -0.1
772,892 + -0.3
772,894 + -2.8
772,903 + -0.0
772,904 - -1.7
772,904 - -0.0
772,912 + -0.6
772,925 + 0.0
773,052 - 0.7
773,066 - 0.3
773,204 - 1.0