Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7632

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7631: 15999 - KOG0226 RNA-binding proteins, at 721192 to 722141 15999 mRNA_7632: 16000 - KOG0383 Predicted helicase, at 722943 to 730457 16000 mRNA_7633: 16001 - KOG1947 Leucine rich repeat proteins, some proteins contain F-box, at 730629 to 733694 16001

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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722,113 + -1.7
722,151 + -1.0
722,160 + 1.5
722,301 + 0.2
722,410 - 0.6
722,575 - 0.0
722,704 - 0.5
722,773 - -0.4
722,828 - -0.3
722,866 + 0.3
723,164 + -1.3
723,187 - 0.3
723,474 + 0.1
723,594 + 0.4
725,353 + 16000 mRNA_7632 0.32 -0.5
725,520 - 16000 mRNA_7632 0.34 -0.7
725,724 + 16000 mRNA_7632 0.37 1.1
726,468 + 16000 mRNA_7632 0.47 -0.3
727,097 + 16000 mRNA_7632 0.55 -2.9
727,522 - 16000 mRNA_7632 0.61 -2.3
727,788 - 16000 mRNA_7632 0.64 0.5
727,822 - 16000 mRNA_7632 0.65 0.3
727,951 + 16000 mRNA_7632 0.67 -1.7
727,999 - 16000 mRNA_7632 0.67 -0.2
728,126 - 16000 mRNA_7632 0.69 1.1
728,280 - 16000 mRNA_7632 0.71 -1.0
728,345 - 16000 mRNA_7632 0.72 -0.4
728,647 + 16000 mRNA_7632 0.76 -0.5
729,014 + 16000 mRNA_7632 0.81 -1.3
729,090 + 16000 mRNA_7632 0.82 -1.9
729,376 - 16000 mRNA_7632 0.86 0.5
729,893 + 1.8
730,271 - 1.9
730,580 + -1.3
730,649 + 1.8
730,663 - 0.9
730,675 - 0.3
730,949 + 16001 mRNA_7633 0.10 -0.6
731,011 + 16001 mRNA_7633 0.12 0.5
731,035 + 16001 mRNA_7633 0.13 0.6
731,132 - 16001 mRNA_7633 0.16 -2.0