Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7607

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7606: 15974 - Hypothetical Protein, at 664256 to 665164 15974 mRNA_7607: 15975 - BLAST UPF0428 CXorf56-like protein, putative [Rhizoctonia s..., at 665409 to 666288 15975 mRNA_7608: 15976 - K10847 XPA DNA-repair protein complementing XP-A cells, at 666565 to 667853 15976

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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664,494 + 15974 mRNA_7606 0.26 0.6
664,497 + 15974 mRNA_7606 0.27 0.2
664,795 - 15974 mRNA_7606 0.59 -0.1
664,926 + 15974 mRNA_7606 0.74 -0.1
665,086 - -0.3
665,222 - 0.6
665,362 - 1.3
665,362 - 0.0
665,375 + 0.1
665,396 - 0.5
665,511 + 15975 mRNA_7607 0.12 0.7
665,519 - 15975 mRNA_7607 0.12 0.9
665,541 - 15975 mRNA_7607 0.15 2.0
665,546 + 15975 mRNA_7607 0.16 0.8
665,668 + 15975 mRNA_7607 0.29 -1.6
665,673 - 15975 mRNA_7607 0.30 -0.3
665,679 + 15975 mRNA_7607 0.31 0.7
665,685 + 15975 mRNA_7607 0.31 0.3
665,834 - 15975 mRNA_7607 0.48 1.3
666,224 - 0.2
666,667 - -0.7
666,668 + -2.0
666,675 + -1.9
666,676 + -1.2
666,678 + 1.4
666,708 - 15976 mRNA_7608 0.11 -0.2
666,841 + 15976 mRNA_7608 0.21 -0.4
667,141 + 15976 mRNA_7608 0.45 -0.1
667,180 + 15976 mRNA_7608 0.48 0.3