Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7594

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7593: 15961 - K15631 ABA3 molybdenum cofactor sulfurtransferase, at 637612 to 640700 15961 mRNA_7594: 15962 - K00106 XDH xanthine dehydrogenase/oxidase, at 640991 to 646168 15962 mRNA_7595: 15963 - K02151 ATPeV1F, ATP6S14 V-type H+-transporting ATPase subunit F, at 646421 to 647106 15963 mRNA_7596: 15964 - HMMPfam-MYND finger-PF01753,ProSitePatterns-Zinc finger MYND-type signature.-PS01360,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232, at 647163 to 648088 15964

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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640,053 - 15961 mRNA_7593 0.79 -1.6
640,080 + 15961 mRNA_7593 0.80 -1.0
640,260 - 15961 mRNA_7593 0.86 -0.7
640,341 - 15961 mRNA_7593 0.88 -1.2
640,341 - 15961 mRNA_7593 0.88 -0.8
640,346 - 15961 mRNA_7593 0.89 0.4
640,372 + 15961 mRNA_7593 0.89 -0.2
640,643 - -1.0
640,813 - 0.4
640,820 + 0.5
640,828 - 1.9
640,836 - -0.1
640,836 + 0.5
640,958 - 1.1
640,968 + 0.8
640,969 + 0.3
640,972 - -0.9
640,976 - -0.1
640,977 + 0.8
640,980 - 0.1
641,081 - 1.0
641,252 - 0.3
641,279 - -0.6
641,362 - -0.3
641,419 + 1.6
641,524 + 15962 mRNA_7594 0.10 0.7
641,548 - 15962 mRNA_7594 0.11 0.9
641,681 - 15962 mRNA_7594 0.13 -1.8
641,707 + 15962 mRNA_7594 0.14 1.1
641,855 - 15962 mRNA_7594 0.17 -0.0
641,972 - 15962 mRNA_7594 0.19 0.3
641,982 - 15962 mRNA_7594 0.19 0.4
642,406 + 15962 mRNA_7594 0.27 0.2
642,480 + 15962 mRNA_7594 0.29 0.6
642,784 - 15962 mRNA_7594 0.35 0.6
642,902 + 15962 mRNA_7594 0.37 0.6
642,989 - 15962 mRNA_7594 0.39 0.5
643,033 + 15962 mRNA_7594 0.39 0.1
643,200 - 15962 mRNA_7594 0.43 0.7
643,735 + 15962 mRNA_7594 0.53 1.0
643,819 - 15962 mRNA_7594 0.55 -0.8
644,024 - 15962 mRNA_7594 0.59 -0.3
644,233 - 15962 mRNA_7594 0.63 0.5
644,236 + 15962 mRNA_7594 0.63 -0.8
644,373 - 15962 mRNA_7594 0.65 -0.1
644,501 + 15962 mRNA_7594 0.68 0.1
644,507 + 15962 mRNA_7594 0.68 0.8
644,531 - 15962 mRNA_7594 0.68 -0.4
644,654 - 15962 mRNA_7594 0.71 -0.3
644,831 - 15962 mRNA_7594 0.74 -0.7
645,118 - 15962 mRNA_7594 0.80 -0.9
645,219 - 15962 mRNA_7594 0.82 -0.8
645,220 - 15962 mRNA_7594 0.82 1.2
645,245 - 15962 mRNA_7594 0.82 -0.5
645,393 - 15962 mRNA_7594 0.85 0.5
645,400 + 15962 mRNA_7594 0.85 0.2
645,414 + 15962 mRNA_7594 0.85 -0.5
645,521 + 15962 mRNA_7594 0.87 1.5
645,675 + -0.8
645,999 + 0.0
646,100 - 0.1
646,142 + 0.9
646,267 - 0.1
646,267 - 0.6
646,273 + 1.8
646,390 + -0.3