Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7585

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7584: 15952 - KOG0546 HSP90 co-chaperone CPR7/Cyclophilin, at 617839 to 618826 15952 mRNA_7585: 15953 - K03650 mnmE, trmE, MSS1 tRNA modification GTPase, at 619020 to 621044 15953 mRNA_7586: 15954 - HMMPfam-Cytochrome oxidase c assembly-PF14880, at 621173 to 621587 15954 mRNA_7587: 15955 - HMMPfam-Protein of unknown function (DUF2413)-PF10310, at 621699 to 623748 15955

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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618,089 - 15952 mRNA_7584 0.25 2.5
618,239 - 15952 mRNA_7584 0.40 -0.5
618,689 - 15952 mRNA_7584 0.86 -0.4
618,698 + 15952 mRNA_7584 0.87 0.5
618,814 + 0.0
618,825 + 2.8
618,843 - 0.2
618,960 - 0.9
618,969 - -1.1
618,971 - 1.0
618,974 + -0.9
619,683 - 15953 mRNA_7585 0.33 -0.1
619,717 - 15953 mRNA_7585 0.34 1.0
619,718 - 15953 mRNA_7585 0.34 -1.6
619,913 - 15953 mRNA_7585 0.44 -1.7
620,297 - 15953 mRNA_7585 0.63 -0.2
620,437 - 15953 mRNA_7585 0.70 0.7
620,496 - 15953 mRNA_7585 0.73 -1.0
620,731 - 15953 mRNA_7585 0.84 -0.6
620,911 - 0.4
620,932 - -0.9
620,933 - -1.0
620,992 + -1.4
621,040 + 0.6
621,331 + 15954 mRNA_7586 0.38 0.5
621,350 - 15954 mRNA_7586 0.43 -0.3
621,517 + 15954 mRNA_7586 0.83 -1.1
621,596 - 1.4
621,600 - -0.4
621,605 + 1.1
621,639 - -0.6
621,640 + 1.5
621,772 - 0.2
621,774 + 0.6
621,788 - 1.8
621,789 + 1.4
621,796 - 0.6
621,960 + 15955 mRNA_7587 0.13 -1.5