Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7558

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7558: 15926 - K00485 FMO dimethylaniline monooxygenase (N-oxide forming), at 561272 to 563698 15926 mRNA_7559: 15927 - HMMPfam-PLAC8 family-PF04749,TIGRFAM-A_thal_Cys_rich uncharacterized Cys-rich domain-TIGR01571, at 563948 to 564897 15927

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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560,379 - 0.3
560,533 + 0.2
560,535 + -0.7
560,621 - -2.6
560,668 + -1.8
560,669 - 1.0
560,674 + 0.6
560,675 - 0.2
560,684 + -0.1
560,687 + 0.4
560,724 - -1.8
560,800 + -1.6
560,806 - -1.0
560,819 - -0.3
560,952 + -0.7
560,952 + 1.5
560,959 - -0.5
561,096 - 1.2
561,102 - -0.3
561,155 + -0.4
561,216 + 0.4
561,257 + -0.5
561,269 - 0.8
561,271 - 1.3
561,661 - 15926 mRNA_7558 0.16 -0.1
561,838 + 15926 mRNA_7558 0.23 -0.9
562,418 + 15926 mRNA_7558 0.47 -0.5
562,448 + 15926 mRNA_7558 0.48 -0.3
562,570 - 15926 mRNA_7558 0.53 -0.3
562,575 - 15926 mRNA_7558 0.54 0.2
562,577 + 15926 mRNA_7558 0.54 -0.3
563,313 - 15926 mRNA_7558 0.84 -1.3
563,452 - 15926 mRNA_7558 0.90 -0.2
563,585 + 1.3
563,597 + -0.7
563,607 + 0.0
563,609 + 0.4
563,611 + 2.2
563,638 - -1.9
563,723 - 1.6
563,743 + -1.5
563,744 + -1.7
563,747 - 1.6
563,766 + 0.1
563,767 + 0.6
563,770 + -0.2
563,872 + -0.9
564,056 + 15927 mRNA_7559 0.11 -0.3
564,184 - 15927 mRNA_7559 0.25 -0.3
564,192 - 15927 mRNA_7559 0.26 0.3
564,194 + 15927 mRNA_7559 0.26 -0.9
564,211 + 15927 mRNA_7559 0.28 -1.3
564,219 - 15927 mRNA_7559 0.29 0.0
564,333 + 15927 mRNA_7559 0.41 0.6
564,484 + 15927 mRNA_7559 0.56 -0.3
564,636 - 15927 mRNA_7559 0.72 -1.7
564,667 + 15927 mRNA_7559 0.76 -0.6