Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7557

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7556: 15924 - K12734 PPIL3 peptidyl-prolyl cis-trans isomerase-like 3, at 554930 to 556179 15924 mRNA_7557: 15925 - Hypothetical Protein, at 556281 to 558919 15925

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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555,421 + 15924 mRNA_7556 0.39 0.5
555,695 - 15924 mRNA_7556 0.61 0.8
556,003 + 15924 mRNA_7556 0.86 -0.0
556,285 + -0.0
556,291 - -1.9
556,299 + 0.5
556,435 - 0.2
556,481 + -0.5
557,157 + 15925 mRNA_7557 0.33 1.2
557,900 + 15925 mRNA_7557 0.61 1.9
557,915 + 15925 mRNA_7557 0.62 -2.0
558,752 - -0.3
559,030 - -0.8
559,220 - -0.7
559,223 - -0.9
559,224 + 0.5
559,225 - 0.4
559,228 - -0.6
559,230 - -2.0
559,231 + 0.2
559,233 - 2.2
559,233 - 1.1
559,235 + 0.4
559,246 - -0.2
559,246 - 0.7
559,253 - 0.1
559,257 - -0.3
559,260 - 0.0
559,265 - 0.8
559,265 + 1.0
559,317 - -2.0
559,318 + 0.5
559,330 - 1.1
559,330 - 0.5
559,337 + -0.3
559,348 - 1.5
559,388 - 1.3
559,396 + 0.2
559,398 + 1.0
559,398 + -0.4
559,446 - 0.5
559,448 + 0.1
559,449 - 3.3
559,450 - 1.5
559,450 - 1.0
559,454 - 1.0
559,468 - 0.5
559,477 + -0.4
559,477 - 0.9
559,482 - -0.0
559,627 + -0.6
559,629 - -0.8
559,633 + 0.2
559,663 - -1.2
559,769 - 1.9