Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7523

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7522: 15890 - HMMPfam-Helix-loop-helix DNA-binding domain-PF00010,ProSiteProfiles-Myc-type, basic helix-loop-helix (bHLH) domain profile.-PS50888,SMART-helix loop helix domain-SM00353,SUPERFAMILY--SSF47459, at 490428 to 491714 15890 mRNA_7523: 15891 - KOG0143 Iron/ascorbate family oxidoreductases, at 492081 to 493296 15891 mRNA_7524: 15892 - BLAST putative heatshock protein [Serpula lacrymans var..., at 493543 to 495211 15892

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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491,085 - 15890 mRNA_7522 0.51 -0.1
491,425 - 15890 mRNA_7522 0.77 0.9
491,543 - 15890 mRNA_7522 0.87 0.3
491,573 + 15890 mRNA_7522 0.89 -0.7
491,646 - -0.2
491,647 + -0.3
491,760 - -0.1
491,849 - -3.2
491,986 + 0.6
492,005 - -1.6
492,044 + 0.5
492,053 + 0.8
492,063 + -0.0
492,303 - 15891 mRNA_7523 0.18 -1.1
492,418 + 15891 mRNA_7523 0.28 0.1
492,452 - 15891 mRNA_7523 0.31 0.8
492,904 + 15891 mRNA_7523 0.68 -1.4
492,919 + 15891 mRNA_7523 0.69 -2.9
492,921 + 15891 mRNA_7523 0.69 -0.1
493,059 + 15891 mRNA_7523 0.80 0.6
493,066 + 15891 mRNA_7523 0.81 -0.0
493,344 - 0.3
493,349 - -0.7
493,361 + -0.2
493,383 - 1.2
493,498 + 0.1
493,524 - 0.6
493,526 + -0.5
493,540 - -0.3
493,656 + 1.1
493,823 - 15892 mRNA_7524 0.17 -0.1
493,933 + 15892 mRNA_7524 0.23 -0.2
493,985 - 15892 mRNA_7524 0.26 -1.4