Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7510

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7509: 15877 - K11548 NUF2, CDCA1 kinetochore protein Nuf2, at 459661 to 461495 15877 mRNA_7510: 15878 - K11644 SIN3A paired amphipathic helix protein Sin3a, at 461647 to 466734 15878 mRNA_7511: 15879 - K01507 ppa inorganic pyrophosphatase, at 466994 to 468563 15879

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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461,544 - -1.5
461,675 - 0.8
461,844 + -0.4
461,859 + 1.4
465,173 - 15878 mRNA_7510 0.69 1.4
465,740 - 15878 mRNA_7510 0.80 1.2
465,869 - 15878 mRNA_7510 0.83 1.3
466,047 - 15878 mRNA_7510 0.86 0.6
466,154 + 15878 mRNA_7510 0.89 1.4
466,177 + 15878 mRNA_7510 0.89 0.5
466,184 + 15878 mRNA_7510 0.89 1.2
466,188 + 15878 mRNA_7510 0.89 0.8
466,191 + 15878 mRNA_7510 0.89 2.5
466,356 + 1.2
466,460 + 1.8
466,467 - 1.1
466,469 + 1.7
466,472 + 1.5
466,479 + 1.3
466,611 + -1.0
466,613 + 0.6
466,634 + 0.2
466,738 - 1.5
466,751 - 1.8
466,753 - 1.0
466,758 + 2.5
466,783 + 1.1
466,885 - 0.9
466,905 + -1.3
466,907 - 0.6
466,914 + 1.1
466,916 + -0.7
466,922 - 1.5
466,929 - 1.9