Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7492

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7492: 15860 - KOG2301 Voltage-gated Ca2+ channels, alpha1 subunits, at 413900 to 421307 15860 mRNA_7493: 15861 - K00489 CYP7A1 cholesterol 7alpha-monooxygenase, at 421579 to 423387 15861

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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412,916 - -0.3
412,937 + -1.0
413,041 - 0.2
413,207 + 1.7
413,319 - 1.2
413,353 - 0.9
413,370 + 0.9
413,651 - 0.6
413,785 - 1.3
413,901 + 0.6
413,909 + -0.1
413,978 + 0.5
414,526 + -0.3
414,813 - 15860 mRNA_7492 0.12 -1.2
415,379 - 15860 mRNA_7492 0.20 0.2
415,389 - 15860 mRNA_7492 0.20 0.7
415,726 + 15860 mRNA_7492 0.25 0.5
416,125 + 15860 mRNA_7492 0.30 0.6
416,394 - 15860 mRNA_7492 0.34 -1.0
416,687 + 15860 mRNA_7492 0.38 1.1
416,868 + 15860 mRNA_7492 0.40 0.8
416,887 - 15860 mRNA_7492 0.40 0.4
417,729 - 15860 mRNA_7492 0.52 1.0
417,873 - 15860 mRNA_7492 0.54 0.2
418,404 + 15860 mRNA_7492 0.61 0.6
419,005 + 15860 mRNA_7492 0.69 0.9
419,186 + 15860 mRNA_7492 0.71 -0.4
419,457 + 15860 mRNA_7492 0.75 0.6
419,469 + 15860 mRNA_7492 0.75 -0.9
419,484 + 15860 mRNA_7492 0.75 0.8
419,958 - 15860 mRNA_7492 0.82 -1.4
420,014 - 15860 mRNA_7492 0.83 -0.0
420,053 - 15860 mRNA_7492 0.83 0.8
420,093 - 15860 mRNA_7492 0.84 1.7
420,648 - 1.9
420,869 + 1.3
420,939 - 1.4
420,957 - -0.1
421,093 - 0.3
421,120 - 0.6
421,253 + 0.3
421,408 - 1.7
421,665 - -0.3
421,666 - -0.3
421,677 - -0.2
421,678 - 1.1
421,681 - 0.4
421,689 - 0.0
421,690 + -0.4
421,692 - 1.1
421,694 + 0.8
421,697 + 0.1
421,842 + 15861 mRNA_7493 0.15 -0.4
421,969 - 15861 mRNA_7493 0.22 0.5
421,970 - 15861 mRNA_7493 0.22 0.3
421,976 + 15861 mRNA_7493 0.22 0.7
421,988 - 15861 mRNA_7493 0.23 0.4
422,126 + 15861 mRNA_7493 0.30 1.0
422,272 + 15861 mRNA_7493 0.38 0.6
422,307 + 15861 mRNA_7493 0.40 -0.2