Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7490

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7489: 15857 - K12351 SMPD2 sphingomyelin phosphodiesterase 2, at 408031 to 409638 15857 mRNA_7490: 15858 - K20167 TBC1D14 TBC1 domain family member 14, at 409726 to 411732 15858 mRNA_7491: 15859 - K19267 qorB NAD(P)H dehydrogenase (quinone), at 411819 to 412834 15859

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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408,908 - 15857 mRNA_7489 0.55 -1.4
409,011 - 15857 mRNA_7489 0.61 -0.8
409,089 + 15857 mRNA_7489 0.66 -1.2
409,231 + 15857 mRNA_7489 0.75 1.1
409,386 - 15857 mRNA_7489 0.84 -0.2
409,501 + -0.8
409,502 + -0.2
409,503 - 0.9
409,507 - -1.3
409,653 - -1.1
409,665 - -0.1
409,669 - 0.3
409,669 + 3.1
409,772 + 0.8
409,803 - 2.1
409,954 + 15858 mRNA_7490 0.11 -0.4
410,091 - 15858 mRNA_7490 0.18 -1.6
410,124 - 15858 mRNA_7490 0.20 1.6
410,276 + 15858 mRNA_7490 0.27 0.6
410,675 - 15858 mRNA_7490 0.47 -1.1
410,858 + 15858 mRNA_7490 0.56 -0.3
411,007 - 15858 mRNA_7490 0.64 0.0
411,143 + 15858 mRNA_7490 0.71 -2.4
411,566 - 0.2
411,739 + 1.1
411,748 - 1.5
411,765 - -1.6
411,871 - 0.8
411,895 + -2.7
412,000 - 15859 mRNA_7491 0.18 -1.1
412,034 + 15859 mRNA_7491 0.21 -0.2
412,036 - 15859 mRNA_7491 0.21 0.6
412,037 + 15859 mRNA_7491 0.21 -0.9
412,195 + 15859 mRNA_7491 0.37 -0.3
412,195 + 15859 mRNA_7491 0.37 0.1
412,195 + 15859 mRNA_7491 0.37 2.8
412,200 - 15859 mRNA_7491 0.38 0.1
412,461 + 15859 mRNA_7491 0.63 0.2
412,481 - 15859 mRNA_7491 0.65 -0.2