Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7429

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7428: 15796 - Interpro XLF-Cernunnos, XRcc4-like factor, NHEJ component, at 251137 to 252658 15796 mRNA_7429: 15797 - KOG0254 Predicted transporter (major facilitator superfamily), at 252711 to 255477 15797 mRNA_7430: 15798 - HMMPfam-Methyltransferase domain-PF13489,SUPERFAMILY--SSF53335, at 256122 to 258039 15798

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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252,155 - 15796 mRNA_7428 0.67 -1.8
252,169 + 15796 mRNA_7428 0.68 -2.4
252,622 + -0.3
252,895 + 1.6
253,018 - 15797 mRNA_7429 0.11 0.0
253,050 - 15797 mRNA_7429 0.12 0.4
253,513 - 15797 mRNA_7429 0.29 -1.9
253,707 - 15797 mRNA_7429 0.36 1.4
254,227 - 15797 mRNA_7429 0.55 -0.7
254,475 + 15797 mRNA_7429 0.64 -0.2
255,086 + 15797 mRNA_7429 0.86 -0.0
255,443 + -0.3
255,528 - 0.1
255,532 + 0.3
255,564 - -0.8
255,570 + -1.2
255,571 - -1.6
255,574 + 0.2
255,574 + -0.4
255,586 + 0.7
255,704 - -0.7
255,723 - 0.8
255,884 + 1.8
255,892 - 2.1
255,992 - -0.1
256,033 - 0.4
256,044 + 0.6
256,047 - 0.3
256,178 + -0.1