Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7409

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7408: 15776 - K18422 MOV10 helicase MOV-10, at 204696 to 207946 15776 mRNA_7409: 15777 - HMMPfam-Nucleoporin subcomplex protein binding to Pom34-PF10487, at 208136 to 214432 15777 mRNA_7410: 15778 - BLAST capsular associated protein [Coprinopsis cinerea ..., at 214595 to 216194 15778

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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207,259 - 15776 mRNA_7408 0.79 0.1
207,303 + 15776 mRNA_7408 0.80 -0.0
207,407 - 15776 mRNA_7408 0.83 1.1
207,540 - 15776 mRNA_7408 0.87 -0.7
207,590 + 15776 mRNA_7408 0.89 -0.1
207,638 - -0.0
207,703 - -1.1
207,867 - 0.6
207,869 + 2.3
208,014 - -0.8
209,150 + 15777 mRNA_7409 0.16 -0.6
209,177 + 15777 mRNA_7409 0.17 1.1
210,021 + 15777 mRNA_7409 0.30 0.3
210,124 + 15777 mRNA_7409 0.32 0.3
211,046 + 15777 mRNA_7409 0.46 0.4
211,914 - 15777 mRNA_7409 0.60 -0.2
212,769 + 15777 mRNA_7409 0.74 -1.1
212,906 - 15777 mRNA_7409 0.76 0.4
213,024 - 15777 mRNA_7409 0.78 1.5
213,105 - 15777 mRNA_7409 0.79 -0.2
213,241 - 15777 mRNA_7409 0.81 0.4
213,953 - 0.4
213,980 + 0.7
214,103 + 0.6
214,231 - 0.7
214,384 - -0.1
214,388 + -0.8
214,411 + 1.0
214,516 - 0.5
214,528 - 0.7
214,668 - -1.5
214,699 - 0.4
214,812 - 15778 mRNA_7410 0.14 -1.4
214,814 + 15778 mRNA_7410 0.14 1.0
214,980 - 15778 mRNA_7410 0.24 0.4
215,001 - 15778 mRNA_7410 0.25 0.1
215,007 - 15778 mRNA_7410 0.26 0.5
215,025 + 15778 mRNA_7410 0.27 -2.0
215,130 + 15778 mRNA_7410 0.33 -1.2
215,195 + 15778 mRNA_7410 0.38 -0.3