Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7385

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7384: 15752 - K11128 GAR1, NOLA1 H/ACA ribonucleoprotein complex subunit 1, at 152913 to 154132 15752 mRNA_7385: 15753 - ProSiteProfiles-Ubiquitin-interacting motif (UIM) repeat profile.-PS50330, at 154422 to 157963 15753 mRNA_7386: 15754 - HMMPfam-F-box-like-PF12937, at 158123 to 159294 15754

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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154,178 + -1.6
154,210 - 1.0
154,217 + 0.2
154,239 + 1.0
154,256 + -0.1
154,344 - 0.1
154,352 + 0.2
154,353 - 0.1
154,358 - 0.9
154,361 + -1.7
154,364 - -0.3
154,371 - 0.2
154,375 + 2.4
154,379 - -0.1
154,382 + -0.4
154,383 + -1.3
154,404 + 0.2
154,411 - 0.7
154,528 - 2.8
154,668 + 0.3
154,814 - 15753 mRNA_7385 0.11 -0.1
154,853 - 15753 mRNA_7385 0.12 -0.6
155,279 - 15753 mRNA_7385 0.24 0.0
155,419 + 15753 mRNA_7385 0.28 1.0
156,040 + 15753 mRNA_7385 0.46 -0.3
156,182 - 15753 mRNA_7385 0.50 -0.1
156,367 - 15753 mRNA_7385 0.55 -0.8
156,566 + 15753 mRNA_7385 0.61 0.6
157,008 - 15753 mRNA_7385 0.73 -0.8
157,199 + 15753 mRNA_7385 0.78 0.0
157,295 - 15753 mRNA_7385 0.81 -1.4
157,296 + 15753 mRNA_7385 0.81 -0.6
157,487 + 15753 mRNA_7385 0.87 1.9
157,652 + -0.2
157,742 - 1.1
157,862 - -0.3
158,223 - 1.5
158,329 + 15754 mRNA_7386 0.18 -2.5
158,333 - 15754 mRNA_7386 0.18 -2.0
158,399 - 15754 mRNA_7386 0.24 1.7
158,492 + 15754 mRNA_7386 0.31 0.5
158,496 - 15754 mRNA_7386 0.32 -0.0
158,508 + 15754 mRNA_7386 0.33 -1.4