Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7333

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7332: 15700 - K05542 DUS1 tRNA-dihydrouridine synthase 1, at 26472 to 27994 15700 mRNA_7333: 15701 - SUPERFAMILY--SSF52047, at 28402 to 29421 15701 mRNA_7334: 15702 - HMMPfam-RTA1 like protein-PF04479, at 29500 to 31086 15702

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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27,576 + 15700 mRNA_7332 0.72 0.6
27,627 - 15700 mRNA_7332 0.76 0.3
27,726 - 15700 mRNA_7332 0.82 0.1
27,732 + 15700 mRNA_7332 0.83 0.3
27,878 + -0.7
28,011 + -0.2
28,056 - 0.3
28,056 - -0.6
28,314 - 0.8
28,314 - 1.6
28,315 + 0.8
28,319 + -0.5
28,459 + 2.2
28,468 + -1.3
28,471 + 0.7
28,715 - 15701 mRNA_7333 0.31 -0.3
28,900 + 15701 mRNA_7333 0.49 -1.1
28,901 - 15701 mRNA_7333 0.49 1.3
29,051 + 15701 mRNA_7333 0.64 1.9
29,314 - 15701 mRNA_7333 0.89 0.5
29,371 - 0.6
29,516 - -0.5
29,620 - -0.3
29,620 + -0.0
29,664 - 15702 mRNA_7334 0.10 1.2
29,702 - 15702 mRNA_7334 0.13 0.8
29,913 - 15702 mRNA_7334 0.26 -0.2
29,970 + 15702 mRNA_7334 0.30 -1.2
30,341 - 15702 mRNA_7334 0.53 -0.4