Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7330

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7329: 15697 - KOG0039 Ferric reductase, NADH/NADPH oxidase and related proteins, at 19651 to 22039 15697 mRNA_7330: 15698 - KOG0409 Predicted dehydrogenase, at 22556 to 24304 15698 mRNA_7331: 15699 - KOG1666 V-SNARE, at 24685 to 25773 15699

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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21,687 + 15697 mRNA_7329 0.85 0.6
21,838 - -1.6
21,990 + 0.5
21,996 - 0.9
22,283 - 0.4
22,425 - 0.1
22,446 - 0.8
23,344 + 15698 mRNA_7330 0.45 -0.9
23,560 + 15698 mRNA_7330 0.57 1.4
23,877 + 15698 mRNA_7330 0.76 -3.2
24,463 + 0.7
24,490 + 0.2
24,493 + -0.5
24,495 + -0.3
24,635 - -1.6
24,672 + 0.5
24,676 + -0.9
24,772 - -1.0
24,939 + 15699 mRNA_7331 0.23 -1.8
25,082 + 15699 mRNA_7331 0.36 -0.2
25,245 + 15699 mRNA_7331 0.51 -0.5