Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7327

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7326: 15694 - K01969 E6.4.1.4B 3-methylcrotonyl-CoA carboxylase beta subunit, at 12485 to 14861 15694 mRNA_7327: 15695 - KOG2883 NIPSNAP1 protein, at 15080 to 16504 15695 mRNA_7328: 15696 - KOG1339 Aspartyl protease, at 16802 to 18584 15696

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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14,287 - 15694 mRNA_7326 0.76 1.5
14,307 + 15694 mRNA_7326 0.77 0.4
14,508 + 15694 mRNA_7326 0.85 2.0
14,779 + 0.2
14,794 - 0.0
14,908 + 1.5
14,911 - 1.4
14,911 - -0.2
14,920 + -1.5
14,945 - 0.9
14,945 - -0.2
14,958 + -0.9
14,972 + 1.3
14,989 + -0.1
14,993 + -0.4
15,064 - 1.1
15,090 - -0.3
15,104 + -0.4
15,370 - 15695 mRNA_7327 0.20 0.0
15,373 + 15695 mRNA_7327 0.21 -1.3
15,541 + 15695 mRNA_7327 0.32 1.0
15,545 + 15695 mRNA_7327 0.33 3.8
15,548 + 15695 mRNA_7327 0.33 0.2
15,721 + 15695 mRNA_7327 0.45 0.8
15,781 + 15695 mRNA_7327 0.49 1.8
15,781 - 15695 mRNA_7327 0.49 1.4
16,260 - 15695 mRNA_7327 0.83 0.2
16,270 - 15695 mRNA_7327 0.84 -0.8
16,314 + 15695 mRNA_7327 0.87 -2.2
16,588 + -0.6
16,598 + -0.1
16,769 - -0.3
16,797 + 0.6
17,098 - 15696 mRNA_7328 0.17 0.3
17,165 + 15696 mRNA_7328 0.20 0.8
17,318 + 15696 mRNA_7328 0.29 -0.6