Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7321

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7320: 15688 - BLAST genomic scaffold, msy-sf-7 protein, putative [Rhizoct..., at 106 to 1532 15688 mRNA_7321: 15689 - KOG1339 Aspartyl protease, at 1943 to 3763 15689 mRNA_7322: 15690 - K14849 RRP1 ribosomal RNA-processing protein 1, at 4422 to 5823 15690

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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945 + 15688 mRNA_7320 0.59 0.3
1,059 + 15688 mRNA_7320 0.67 -1.1
1,167 + 15688 mRNA_7320 0.74 -0.1
1,174 + 15688 mRNA_7320 0.75 1.4
1,182 - 15688 mRNA_7320 0.75 -0.0
1,196 + 15688 mRNA_7320 0.76 1.7
1,218 + 15688 mRNA_7320 0.78 0.1
1,258 + 15688 mRNA_7320 0.81 -0.9
1,326 - 15688 mRNA_7320 0.85 1.6
1,360 + 15688 mRNA_7320 0.88 -0.5
1,366 + 15688 mRNA_7320 0.88 0.9
1,497 - -0.6
1,518 + 0.3
1,582 + -0.9
1,666 - -1.4
1,675 + -0.5
1,789 - 0.2
1,907 + -0.5
1,929 + -0.5
1,948 + 1.9
2,105 - 0.2
2,297 - 15689 mRNA_7321 0.19 0.9
2,508 - 15689 mRNA_7321 0.31 -0.3
2,521 + 15689 mRNA_7321 0.32 0.7
2,526 + 15689 mRNA_7321 0.32 -1.5
2,529 - 15689 mRNA_7321 0.32 -1.4
2,529 - 15689 mRNA_7321 0.32 -0.6
2,535 + 15689 mRNA_7321 0.33 -0.9
2,537 + 15689 mRNA_7321 0.33 -0.3
2,546 + 15689 mRNA_7321 0.33 1.3
2,548 - 15689 mRNA_7321 0.33 0.6
2,680 + 15689 mRNA_7321 0.40 -1.1
2,682 - 15689 mRNA_7321 0.41 1.7
2,707 + 15689 mRNA_7321 0.42 0.2
2,723 - 15689 mRNA_7321 0.43 0.1
2,723 + 15689 mRNA_7321 0.43 0.3
2,787 - 15689 mRNA_7321 0.46 -3.3
2,811 - 15689 mRNA_7321 0.48 0.3
2,857 + 15689 mRNA_7321 0.50 0.1
2,870 + 15689 mRNA_7321 0.51 -0.3
2,884 + 15689 mRNA_7321 0.52 -0.4
2,924 + 15689 mRNA_7321 0.54 0.7
2,973 + 15689 mRNA_7321 0.57 1.1
2,988 + 15689 mRNA_7321 0.57 -0.9
2,988 + 15689 mRNA_7321 0.57 -0.4
2,988 - 15689 mRNA_7321 0.57 0.0
2,991 - 15689 mRNA_7321 0.58 -0.2
3,008 + 15689 mRNA_7321 0.58 1.1
3,020 + 15689 mRNA_7321 0.59 0.4
3,146 + 15689 mRNA_7321 0.66 0.3
3,273 - 15689 mRNA_7321 0.73 0.2
3,366 + 15689 mRNA_7321 0.78 1.5
3,391 + 15689 mRNA_7321 0.80 -1.2
3,397 + 15689 mRNA_7321 0.80 -1.0
3,407 - 15689 mRNA_7321 0.80 0.7
3,458 + 15689 mRNA_7321 0.83 -0.6
3,461 + 15689 mRNA_7321 0.83 1.3
3,499 + 15689 mRNA_7321 0.85 -0.5
3,517 + 15689 mRNA_7321 0.86 -0.7
3,520 + 15689 mRNA_7321 0.87 0.6
3,523 + 15689 mRNA_7321 0.87 0.2
3,564 + 15689 mRNA_7321 0.89 0.1
3,645 - -0.2
3,732 + 1.0
3,815 + -0.5
3,862 - 0.1
3,864 - 0.4
3,919 - -0.4
3,939 + -0.8
3,945 - 1.5
3,951 + -1.5
3,964 + 0.8
3,971 + 1.4
3,971 + 1.1
3,971 - 0.3
3,979 - 0.4
3,985 - -0.3
3,986 + -2.2
4,018 - -0.8
4,041 - -1.5
4,042 + 0.3
4,046 - 0.3
4,055 - 0.7
4,058 + -1.5
4,059 + -2.8
4,061 - 0.5
4,072 + -0.2
4,080 - 0.5
4,092 - -2.3
4,117 + -1.0
4,138 - -0.7
4,151 + 1.2
4,156 + 1.3
4,178 + -1.1
4,316 + -1.8
4,320 + 0.8
4,339 + -0.0
4,343 - -2.4