Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7255

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7254: 15622 - Hypothetical Protein, at 1226042 to 1227561 15622 mRNA_7255: 15623 - Hypothetical Protein, at 1227615 to 1231158 15623 mRNA_7256: 15624 - BLAST protein kinase-like domain containing protein [Rh..., at 1231458 to 1233472 15624

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,226,634 - 15622 mRNA_7254 0.39 0.8
1,226,711 + 15622 mRNA_7254 0.44 0.7
1,226,737 + 15622 mRNA_7254 0.46 -0.4
1,226,974 + 15622 mRNA_7254 0.61 -0.1
1,227,028 - 15622 mRNA_7254 0.65 1.0
1,227,122 + 15622 mRNA_7254 0.71 -0.7
1,227,214 + 15622 mRNA_7254 0.77 -0.0
1,227,393 - 15622 mRNA_7254 0.89 -0.4
1,227,524 - -1.1
1,227,541 + 2.5
1,227,561 + 0.2
1,227,566 - 1.2
1,227,698 - -1.3
1,227,699 - 1.6
1,227,701 - -0.4
1,227,709 - -2.6
1,227,709 - -0.5
1,227,710 - 0.7
1,227,715 + 0.1
1,227,715 + -1.1
1,227,718 + -4.8
1,227,814 - -0.6
1,227,844 - 1.2
1,227,854 - 1.1
1,228,043 + 15623 mRNA_7255 0.12 -0.3
1,228,044 - 15623 mRNA_7255 0.12 0.2
1,228,044 - 15623 mRNA_7255 0.12 -0.2
1,228,048 - 15623 mRNA_7255 0.12 0.7
1,228,048 + 15623 mRNA_7255 0.12 -0.6
1,228,054 + 15623 mRNA_7255 0.12 -1.3
1,228,167 + 15623 mRNA_7255 0.16 -2.5
1,228,551 - 15623 mRNA_7255 0.26 0.2
1,228,609 - 15623 mRNA_7255 0.28 -1.8
1,228,722 - 15623 mRNA_7255 0.31 -0.8
1,228,758 + 15623 mRNA_7255 0.32 0.1
1,228,882 + 15623 mRNA_7255 0.36 -0.8
1,228,981 - 15623 mRNA_7255 0.39 2.0
1,229,043 + 15623 mRNA_7255 0.40 0.1
1,229,310 + 15623 mRNA_7255 0.48 0.7
1,229,738 + 15623 mRNA_7255 0.60 0.4
1,229,775 + 15623 mRNA_7255 0.61 -1.3
1,229,811 - 15623 mRNA_7255 0.62 -0.7
1,229,895 - 15623 mRNA_7255 0.64 1.1
1,229,903 - 15623 mRNA_7255 0.65 0.5
1,229,920 - 15623 mRNA_7255 0.65 -0.8
1,229,945 + 15623 mRNA_7255 0.66 0.1
1,229,957 + 15623 mRNA_7255 0.66 -0.8
1,229,960 - 15623 mRNA_7255 0.66 -0.1
1,230,024 - 15623 mRNA_7255 0.68 -0.9
1,230,063 - 15623 mRNA_7255 0.69 -1.5
1,230,185 + 15623 mRNA_7255 0.73 0.6
1,230,197 + 15623 mRNA_7255 0.73 -0.4
1,230,207 + 15623 mRNA_7255 0.73 -0.3
1,230,249 + 15623 mRNA_7255 0.74 -1.7
1,230,335 + 15623 mRNA_7255 0.77 4.1
1,230,353 + 15623 mRNA_7255 0.77 0.9
1,230,356 - 15623 mRNA_7255 0.77 1.1
1,230,715 - 15623 mRNA_7255 0.87 0.1
1,230,772 - 15623 mRNA_7255 0.89 -0.7
1,230,777 + 15623 mRNA_7255 0.89 0.0
1,230,809 + -0.2
1,230,812 - -0.0
1,230,813 - 0.6
1,230,923 - 0.3
1,230,952 + 0.1
1,231,086 + 1.3
1,231,192 - 0.6
1,231,301 - -0.5
1,231,322 + 0.1
1,231,352 - -0.3
1,231,370 - 0.5
1,231,371 + 0.2
1,231,374 + 0.1
1,231,643 - -0.6
1,231,730 - 15624 mRNA_7256 0.13 0.2
1,231,949 + 15624 mRNA_7256 0.24 -0.4
1,231,955 + 15624 mRNA_7256 0.25 1.3