Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7228

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7227: 15595 - K03239 EIF2B1 translation initiation factor eIF-2B subunit alpha, at 1176800 to 1178543 15595 mRNA_7228: 15596 - KOG1674 Cyclin, at 1179153 to 1180280 15596 mRNA_7229: 15597 - Hypothetical Protein, at 1180715 to 1181387 15597

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,178,375 + 0.8
1,178,387 + 0.7
1,178,389 + -0.2
1,178,398 - -1.8
1,178,439 + -1.6
1,178,548 + -1.5
1,178,557 + -1.0
1,178,573 + 0.2
1,178,580 - -0.3
1,178,590 + -0.0
1,178,590 - -1.4
1,178,591 + -1.8
1,178,591 + -0.6
1,178,592 - -1.3
1,178,594 + -0.8
1,178,598 + 0.2
1,178,636 - -1.0
1,178,648 - -0.3
1,178,648 - -0.6
1,178,651 - 0.1
1,178,658 + 1.6
1,178,662 - 2.2
1,178,663 + -0.1
1,178,666 - 0.0
1,178,667 - 0.1
1,178,668 + 0.9
1,178,671 + -1.6
1,178,678 + -0.1
1,178,681 + -0.5
1,178,682 - 0.2
1,178,690 - 1.0
1,178,690 - -1.5
1,178,692 + -1.6
1,178,694 + -2.0
1,178,714 + -0.2
1,178,733 - -0.6
1,178,749 - -2.9
1,178,800 - -0.8
1,178,832 - 0.5
1,178,843 + 0.2
1,178,854 - -2.4
1,178,875 + -1.0
1,178,894 - -0.0
1,178,895 + -0.6
1,178,895 + 2.0
1,178,954 - -0.4
1,178,968 - -0.6
1,178,969 - -0.3
1,178,978 - 0.2
1,178,978 - -1.7
1,178,981 + -0.9
1,178,983 - -0.9
1,178,988 - -0.2
1,178,988 + 0.2
1,178,995 - 0.5
1,179,006 + -1.9
1,179,114 - 2.1
1,179,120 + -0.6
1,179,143 + -0.8
1,179,145 + -0.4
1,179,152 - 0.3
1,179,157 + -0.5
1,179,569 + 15596 mRNA_7228 0.37 0.1
1,179,595 + 15596 mRNA_7228 0.39 -1.2
1,179,602 - 15596 mRNA_7228 0.40 -1.1
1,179,899 - 15596 mRNA_7228 0.66 -0.2
1,180,028 - 15596 mRNA_7228 0.78 0.8
1,180,187 - 0.3
1,180,217 - -0.8
1,180,222 + -1.8
1,180,290 - 0.6
1,180,447 - -0.3
1,180,462 - 0.9
1,180,481 + -0.1
1,180,581 - 1.1
1,180,742 + -0.4
1,180,925 + 15597 mRNA_7229 0.31 -0.2