Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7205

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7204: 15572 - HMMPfam-F-box-like-PF12937,ProSiteProfiles-F-box domain profile.-PS50181,SUPERFAMILY--SSF52047,SUPERFAMILY--SSF81383, at 1118397 to 1120170 15572 mRNA_7205: 15573 - Hypothetical Protein, at 1120664 to 1121084 15573 mRNA_7206: 15574 - BLAST checkpoint 9-1-1 complex, HUS1 component [Moesziomyce..., at 1121305 to 1122113 15574

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,119,820 + 15572 mRNA_7204 0.80 -0.8
1,119,924 + 15572 mRNA_7204 0.86 -0.7
1,120,039 - 1.5
1,120,055 - 0.2
1,120,060 - 0.5
1,120,071 - 0.2
1,120,104 + -0.9
1,120,224 + 1.4
1,120,228 - 0.2
1,120,229 + 1.2
1,120,234 + -1.0
1,120,237 + -0.3
1,120,258 + 0.7
1,120,363 + 0.1
1,120,421 + 1.1
1,120,479 + 0.7
1,120,484 + 0.6
1,120,506 - -0.8
1,120,516 + 2.2
1,120,569 + -0.3
1,120,582 - -1.4
1,120,584 + 0.5
1,120,828 + 15573 mRNA_7205 0.39 0.3
1,120,835 + 15573 mRNA_7205 0.41 -2.2
1,120,838 + 15573 mRNA_7205 0.41 -1.1
1,120,864 + 15573 mRNA_7205 0.48 0.0
1,120,926 - 15573 mRNA_7205 0.62 -1.9
1,120,968 - 15573 mRNA_7205 0.72 -0.9
1,120,969 - 15573 mRNA_7205 0.72 -0.5
1,120,970 + 15573 mRNA_7205 0.73 -0.8
1,120,980 + 15573 mRNA_7205 0.75 1.4
1,121,002 + 15573 mRNA_7205 0.80 -1.4
1,121,050 + -0.5
1,121,103 + -0.0
1,121,104 + -0.2
1,121,116 - 0.7
1,121,137 + 0.4
1,121,141 + 0.3
1,121,152 + -3.0
1,121,153 - 0.1
1,121,153 - -1.5
1,121,154 - 0.3
1,121,166 - 1.0
1,121,170 - 1.5
1,121,174 - -0.4
1,121,175 - -0.0
1,121,175 - 0.5
1,121,181 - -1.3
1,121,183 + 0.2
1,121,183 + 0.2
1,121,197 + -1.1
1,121,200 + 1.0
1,121,208 + 1.1
1,121,214 + 0.6
1,121,220 - 0.2
1,121,313 - 0.1
1,121,343 + 0.0
1,121,405 + 15574 mRNA_7206 0.12 0.0
1,121,412 - 15574 mRNA_7206 0.13 0.1
1,121,543 + 15574 mRNA_7206 0.29 -0.9
1,121,813 - 15574 mRNA_7206 0.63 0.1